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4CX7
Asym. Unit
Info
Asym.Unit (593 KB)
Biol.Unit 1 (581 KB)
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(1)
Title
:
STRUCTURE OF HUMAN INOS HEME DOMAIN IN COMPLEX WITH (R)-6-( 3-AMINO-2-(5-(2-(6-AMINO-4- METHYLPYRIDIN-2-YL)ETHYL) PYRIDIN-3-YL)PROPYL)-4-METHYLPYRIDIN-2-AMINE
Authors
:
H. Li, T. L. Poulos
Date
:
03 Apr 14 (Deposition) - 13 Aug 14 (Release) - 03 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.16
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase, Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Li, J. Jamal, S. L. Delker, C. Plaza, H. Ji, Q. Jing, H. Huang, S. Kang, R. B. Silverman, T. L. Poulos
Mobility Of A Conserved Tyrosine Residue Controls Isoform- Dependent Enzyme-Inhibitor Interactions In Nitric Oxide Synthases.
Biochemistry V. 53 5272 2014
[
close entry info
]
Hetero Components
(5, 25)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Ba)
2b: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Bb)
2c: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Bc)
2d: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Bd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: (R)-6-(3-AMINO-2-(5-(2-(6-AMINO-4-... (S71a)
4b: (R)-6-(3-AMINO-2-(5-(2-(6-AMINO-4-... (S71b)
4c: (R)-6-(3-AMINO-2-(5-(2-(6-AMINO-4-... (S71c)
4d: (R)-6-(3-AMINO-2-(5-(2-(6-AMINO-4-... (S71d)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
H4B
4
Ligand/Ion
5,6,7,8-TETRAHYDROBIOPTERIN
3
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
S71
4
Ligand/Ion
(R)-6-(3-AMINO-2-(5-(2-(6-AMINO-4-METHYLPYRIDIN-2-YL)ETHYL)PYRIDIN-3-YL)PROPYL)-4-METHYLPYRIDIN-2-AMINE
5
SO4
9
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:194 , CYS A:200 , GLN A:205 , SER A:242 , PHE A:369 , ASN A:370 , GLY A:371 , TRP A:372 , GLU A:377 , TRP A:463 , TYR A:489 , TYR A:491 , H4B A:600 , S71 A:800
BINDING SITE FOR RESIDUE HEM A 550
02
AC2
SOFTWARE
SER A:118 , MET A:120 , ARG A:381 , ILE A:462 , TRP A:463 , HEM A:550 , S71 A:800 , TRP B:461 , PHE B:476 , HIS B:477 , GLU B:479
BINDING SITE FOR RESIDUE H4B A 600
03
AC3
SOFTWARE
MET A:120 , THR A:121 , GLN A:263 , PRO A:350 , TRP A:372 , GLU A:377 , TYR A:491 , HEM A:550 , H4B A:600 , GOL A:880 , TRP B:90
BINDING SITE FOR RESIDUE S71 A 800
04
AC4
SOFTWARE
GLN A:263 , ARG A:266 , ALA A:282 , S71 A:800
BINDING SITE FOR RESIDUE GOL A 880
05
AC5
SOFTWARE
GLY A:300 , ARG A:301 , PHE A:302
BINDING SITE FOR RESIDUE SO4 A 910
06
AC6
SOFTWARE
TYR A:336 , GLU A:337 , TRP A:338 , ARG C:340
BINDING SITE FOR RESIDUE SO4 A 920
07
AC7
SOFTWARE
ASN A:236 , ASN A:239 , ASN D:236 , ASN D:239
BINDING SITE FOR RESIDUE SO4 A 930
08
AC8
SOFTWARE
TRP B:194 , CYS B:200 , ILE B:201 , GLN B:205 , PHE B:369 , ASN B:370 , GLY B:371 , TRP B:372 , GLU B:377 , TRP B:463 , TYR B:489 , TYR B:491 , H4B B:600 , S71 B:800
BINDING SITE FOR RESIDUE HEM B 550
09
AC9
SOFTWARE
TRP A:461 , PHE A:476 , HIS A:477 , GLN A:478 , GLU A:479 , SER B:118 , MET B:120 , ARG B:381 , ILE B:462 , TRP B:463 , HEM B:550 , S71 B:800
BINDING SITE FOR RESIDUE H4B B 600
10
BC1
SOFTWARE
TRP A:90 , GLN B:263 , ARG B:266 , VAL B:352 , TRP B:372 , GLU B:377 , TRP B:463 , TYR B:491 , HEM B:550 , H4B B:600 , GOL B:880
BINDING SITE FOR RESIDUE S71 B 800
11
BC2
SOFTWARE
ARG B:266 , ALA B:282 , S71 B:800
BINDING SITE FOR RESIDUE GOL B 880
12
BC3
SOFTWARE
GLY B:300 , ARG B:301
BINDING SITE FOR RESIDUE SO4 B 910
13
BC4
SOFTWARE
LYS B:335 , GLU B:337 , TRP B:338
BINDING SITE FOR RESIDUE SO4 B 920
14
BC5
SOFTWARE
TRP C:194 , CYS C:200 , ILE C:201 , GLN C:205 , SER C:242 , PHE C:369 , ASN C:370 , GLY C:371 , TRP C:372 , GLU C:377 , TRP C:463 , TYR C:489 , TYR C:491 , H4B C:600 , S71 C:800
BINDING SITE FOR RESIDUE HEM C 550
15
BC6
SOFTWARE
SER C:118 , MET C:120 , ARG C:381 , ILE C:462 , TRP C:463 , HEM C:550 , S71 C:800 , TRP D:461 , PHE D:476 , HIS D:477 , GLN D:478 , GLU D:479
BINDING SITE FOR RESIDUE H4B C 600
16
BC7
SOFTWARE
MET C:120 , THR C:121 , GLN C:263 , PRO C:350 , TRP C:372 , GLU C:377 , TRP C:463 , TYR C:491 , HEM C:550 , H4B C:600 , GOL C:880 , TRP D:90
BINDING SITE FOR RESIDUE S71 C 800
17
BC8
SOFTWARE
ARG C:266 , ALA C:282 , S71 C:800
BINDING SITE FOR RESIDUE GOL C 880
18
BC9
SOFTWARE
GLY C:300 , ARG C:301
BINDING SITE FOR RESIDUE SO4 C 910
19
CC1
SOFTWARE
LYS C:335 , TYR C:336 , GLU C:337 , TRP C:338
BINDING SITE FOR RESIDUE SO4 C 920
20
CC2
SOFTWARE
TRP D:194 , CYS D:200 , GLN D:205 , PHE D:369 , ASN D:370 , GLY D:371 , TRP D:372 , GLU D:377 , TRP D:463 , TYR D:491 , H4B D:600 , S71 D:800
BINDING SITE FOR RESIDUE HEM D 550
21
CC3
SOFTWARE
TRP C:461 , PHE C:476 , HIS C:477 , GLN C:478 , SER D:118 , MET D:120 , ARG D:381 , ILE D:462 , TRP D:463 , HEM D:550 , S71 D:800
BINDING SITE FOR RESIDUE H4B D 600
22
CC4
SOFTWARE
TRP C:90 , MET D:120 , THR D:121 , GLN D:263 , PRO D:350 , TRP D:372 , GLU D:377 , TYR D:491 , HEM D:550 , H4B D:600 , GOL D:880
BINDING SITE FOR RESIDUE S71 D 800
23
CC5
SOFTWARE
ARG D:266 , ALA D:282 , S71 D:800
BINDING SITE FOR RESIDUE GOL D 880
24
CC6
SOFTWARE
ARG D:301
BINDING SITE FOR RESIDUE SO4 D 910
25
CC7
SOFTWARE
ARG B:340 , LYS D:335 , TYR D:336 , GLU D:337 , TRP D:338
BINDING SITE FOR RESIDUE SO4 D 920
[
close Site info
]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024548 (R221W, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024548
R
221
W
NOS2_HUMAN
Polymorphism
3730017
A/B/C/D
R
221
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: NOS (A:199-206,B:199-206,C:199-206,D:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NOS
PS60001
Nitric oxide synthase (NOS) signature.
NOS2_HUMAN
199-206
4
A:199-206
B:199-206
C:199-206
D:199-206
[
close PROSITE info
]
Exons
(10, 40)
Info
All Exons
Exon 1.4 (A:83-106 | B:83-106 | C:83-106 | D...)
Exon 1.5 (A:107-156 (gaps) | B:107-156 (gaps...)
Exon 1.6 (A:156-210 | B:156-210 | C:156-210 ...)
Exon 1.7 (A:211-241 | B:211-241 | C:211-241 ...)
Exon 1.8b (A:241-288 | B:241-288 | C:241-288 ...)
Exon 1.9b (A:289-335 | B:289-335 | C:289-335 ...)
Exon 1.10 (A:335-393 | B:335-393 | C:335-393 ...)
Exon 1.11 (A:394-427 | B:394-427 | C:394-427 ...)
Exon 1.12 (A:428-492 | B:428-492 | C:428-492 ...)
Exon 1.13 (A:493-503 | B:493-503 | C:493-503 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.3/1.4
02: Boundary 1.4/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8b
06: Boundary 1.8b/1.9b
07: Boundary 1.9b/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13
11: Boundary 1.13/1.14
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000313735
1b
ENSE00001842263
chr17:
26127525-26127365
161
NOS2_HUMAN
-
0
0
-
-
1.2
ENST00000313735
2
ENSE00001302992
chr17:
26125908-26125726
183
NOS2_HUMAN
1-37
37
0
-
-
1.3
ENST00000313735
3
ENSE00001327291
chr17:
26116714-26116630
85
NOS2_HUMAN
37-65
29
0
-
-
1.4
ENST00000313735
4
ENSE00001310953
chr17:
26115957-26115835
123
NOS2_HUMAN
66-106
41
4
A:83-106
B:83-106
C:83-106
D:83-106
24
24
24
24
1.5
ENST00000313735
5
ENSE00001347946
chr17:
26114852-26114704
149
NOS2_HUMAN
107-156
50
4
A:107-156 (gaps)
B:107-156 (gaps)
C:107-156 (gaps)
D:107-156 (gaps)
50
50
50
50
1.6
ENST00000313735
6
ENSE00001312300
chr17:
26110132-26109970
163
NOS2_HUMAN
156-210
55
4
A:156-210
B:156-210
C:156-210
D:156-210
55
55
55
55
1.7
ENST00000313735
7
ENSE00000705157
chr17:
26109132-26109041
92
NOS2_HUMAN
211-241
31
4
A:211-241
B:211-241
C:211-241
D:211-241
31
31
31
31
1.8b
ENST00000313735
8b
ENSE00001126954
chr17:
26108203-26108062
142
NOS2_HUMAN
241-288
48
4
A:241-288
B:241-288
C:241-288
D:241-288
48
48
48
48
1.9b
ENST00000313735
9b
ENSE00001251789
chr17:
26107932-26107793
140
NOS2_HUMAN
289-335
47
4
A:289-335
B:289-335
C:289-335
D:289-335
47
47
47
47
1.10
ENST00000313735
10
ENSE00001126938
chr17:
26106082-26105908
175
NOS2_HUMAN
335-393
59
4
A:335-393
B:335-393
C:335-393
D:335-393
59
59
59
59
1.11
ENST00000313735
11
ENSE00000704841
chr17:
26105817-26105716
102
NOS2_HUMAN
394-427
34
4
A:394-427
B:394-427
C:394-427
D:394-427
34
34
34
34
1.12
ENST00000313735
12
ENSE00001312003
chr17:
26101477-26101283
195
NOS2_HUMAN
428-492
65
4
A:428-492
B:428-492
C:428-492
D:428-492
65
65
65
65
1.13
ENST00000313735
13
ENSE00000704507
chr17:
26100269-26100187
83
NOS2_HUMAN
493-520
28
4
A:493-503
B:493-503
C:493-503
D:493-503
11
11
11
11
1.14
ENST00000313735
14
ENSE00001327457
chr17:
26099478-26099334
145
NOS2_HUMAN
520-568
49
0
-
-
1.15
ENST00000313735
15
ENSE00000946394
chr17:
26098043-26097939
105
NOS2_HUMAN
569-603
35
0
-
-
1.16
ENST00000313735
16
ENSE00000406697
chr17:
26096610-26096561
50
NOS2_HUMAN
604-620
17
0
-
-
1.17
ENST00000313735
17
ENSE00001309781
chr17:
26096177-26096003
175
NOS2_HUMAN
620-678
59
0
-
-
1.18
ENST00000313735
18
ENSE00001347743
chr17:
26094863-26094731
133
NOS2_HUMAN
679-723
45
0
-
-
1.19
ENST00000313735
19
ENSE00001310933
chr17:
26093614-26093536
79
NOS2_HUMAN
723-749
27
0
-
-
1.20
ENST00000313735
20
ENSE00001126885
chr17:
26092742-26092561
182
NOS2_HUMAN
749-810
62
0
-
-
1.21
ENST00000313735
21
ENSE00001251604
chr17:
26091170-26091007
164
NOS2_HUMAN
810-864
55
0
-
-
1.22
ENST00000313735
22
ENSE00001292830
chr17:
26090031-26089824
208
NOS2_HUMAN
865-934
70
0
-
-
1.23
ENST00000313735
23
ENSE00001304187
chr17:
26088257-26088170
88
NOS2_HUMAN
934-963
30
0
-
-
1.24
ENST00000313735
24
ENSE00001328702
chr17:
26087770-26087649
122
NOS2_HUMAN
963-1004
42
0
-
-
1.25
ENST00000313735
25
ENSE00001788249
chr17:
26087204-26087056
149
NOS2_HUMAN
1004-1053
50
0
-
-
1.26
ENST00000313735
26
ENSE00001322003
chr17:
26086101-26085907
195
NOS2_HUMAN
1054-1118
65
0
-
-
1.27
ENST00000313735
27
ENSE00001704085
chr17:
26084379-26083792
588
NOS2_HUMAN
1119-1153
35
0
-
-
[
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SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
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