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4CVU
Asym. Unit
Info
Asym.Unit (334 KB)
Biol.Unit 1 (640 KB)
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(1)
Title
:
STRUCTURE OF FUNGAL BETA-MANNOSIDASE FROM GLYCOSIDE HYDROLASE FAMILY 2 OF TRICHODERMA HARZIANUM
Authors
:
J. R. C. Muniz, R. Aparicio, J. C. Santos, A. S. Nascimento, A. M. Golubev I. Polikarpov
Date
:
31 Mar 14 (Deposition) - 09 Jul 14 (Release) - 01 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Nascimento, J. R. C. Muniz, R. Aparicio, A. M. Golubev, I. Polikarpov
Insights Into The Structure And Function Of Fungal Beta- Mannosidases From Glycoside Hydrolase Family 2 Based On Multiple Crystal Structures Of The Trichoderma Harzianum Enzyme.
Febs J. V. 281 4165 2014
[
close entry info
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Hetero Components
(9, 62)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
3a: CADMIUM ION (CDa)
3b: CADMIUM ION (CDb)
3c: CADMIUM ION (CDc)
3d: CADMIUM ION (CDd)
3e: CADMIUM ION (CDe)
3f: CADMIUM ION (CDf)
3g: CADMIUM ION (CDg)
3h: CADMIUM ION (CDh)
3i: CADMIUM ION (CDi)
3j: CADMIUM ION (CDj)
3k: CADMIUM ION (CDk)
3l: CADMIUM ION (CDl)
3m: CADMIUM ION (CDm)
3n: CADMIUM ION (CDn)
3o: CADMIUM ION (CDo)
3p: CADMIUM ION (CDp)
3q: CADMIUM ION (CDq)
4a: CHLORIDE ION (CLa)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
5g: ALPHA-D-MANNOSE (MANg)
5h: ALPHA-D-MANNOSE (MANh)
5i: ALPHA-D-MANNOSE (MANi)
5j: ALPHA-D-MANNOSE (MANj)
5k: ALPHA-D-MANNOSE (MANk)
5l: ALPHA-D-MANNOSE (MANl)
5m: ALPHA-D-MANNOSE (MANm)
5n: ALPHA-D-MANNOSE (MANn)
5o: ALPHA-D-MANNOSE (MANo)
5p: ALPHA-D-MANNOSE (MANp)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7l: N-ACETYL-D-GLUCOSAMINE (NAGl)
7m: N-ACETYL-D-GLUCOSAMINE (NAGm)
7n: N-ACETYL-D-GLUCOSAMINE (NAGn)
7o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6a: SODIUM ION (NAa)
6b: SODIUM ION (NAb)
6c: SODIUM ION (NAc)
6d: SODIUM ION (NAd)
6e: SODIUM ION (NAe)
6f: SODIUM ION (NAf)
8a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
9a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
1
Ligand/Ion
CALCIUM ION
3
CD
17
Ligand/Ion
CADMIUM ION
4
CL
1
Ligand/Ion
CHLORIDE ION
5
MAN
16
Ligand/Ion
ALPHA-D-MANNOSE
6
NA
6
Ligand/Ion
SODIUM ION
7
NAG
15
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
PE4
1
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
9
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:62 , GLU A:613 , HOH A:3043 , HOH A:3044 , HOH A:3726
BINDING SITE FOR RESIDUE CD A1978
02
AC2
SOFTWARE
ASN A:72 , ASP A:611 , HOH A:3051 , HOH A:3058 , HOH A:3727
BINDING SITE FOR RESIDUE CD A1979
03
AC3
SOFTWARE
ASN A:75 , HOH A:3050 , HOH A:3728
BINDING SITE FOR RESIDUE CD A1980
04
AC4
SOFTWARE
ASP A:547 , ASP A:549 , GLU A:913 , HOH A:3434 , HOH A:3435
BINDING SITE FOR RESIDUE CD A1981
05
AC5
SOFTWARE
HIS A:267 , ASP A:660
BINDING SITE FOR RESIDUE CD A1982
06
AC6
SOFTWARE
ASP A:430 , ASP A:434 , HOH A:3300 , HOH A:3380
BINDING SITE FOR RESIDUE CD A1983
07
AC7
SOFTWARE
ASP A:430 , HIS A:477 , HIS A:478 , HOH A:3298 , HOH A:3379
BINDING SITE FOR RESIDUE CD A1984
08
AC8
SOFTWARE
GLU A:412 , HOH A:3278 , HOH A:3366
BINDING SITE FOR RESIDUE CD A1985
09
AC9
SOFTWARE
GLU A:381 , HOH A:3322 , HOH A:3323 , HOH A:3563
BINDING SITE FOR RESIDUE CD A1986
10
BC1
SOFTWARE
GLU A:438 , HOH A:3357 , HOH A:3729
BINDING SITE FOR RESIDUE CD A1987
11
BC2
SOFTWARE
ASP A:571 , NA A:2004 , HOH A:3448 , HOH A:3730
BINDING SITE FOR RESIDUE CD A1988
12
BC3
SOFTWARE
ASP A:296 , HOH A:3244 , HOH A:3731
BINDING SITE FOR RESIDUE CD A1989
13
BC4
SOFTWARE
HIS A:848 , HOH A:3549 , HOH A:3668 , HOH A:3682
BINDING SITE FOR RESIDUE CD A1990
14
BC5
SOFTWARE
GLU A:825
BINDING SITE FOR RESIDUE CD A1991
15
BC6
SOFTWARE
ASP A:811
BINDING SITE FOR RESIDUE CD A1992
16
BC7
SOFTWARE
ASP A:306 , HIS A:308 , HOH A:3733
BINDING SITE FOR RESIDUE CD A1993
17
BC8
SOFTWARE
ASP A:402
BINDING SITE FOR RESIDUE CD A1994
18
BC9
SOFTWARE
GLU A:754 , HOH A:3558
BINDING SITE FOR RESIDUE NA A1995
19
CC1
SOFTWARE
ASP A:129 , HOH A:3117
BINDING SITE FOR RESIDUE NA A1996
20
CC2
SOFTWARE
ASP A:409 , HOH A:3735
BINDING SITE FOR RESIDUE NA A1997
21
CC3
SOFTWARE
ASP A:502 , THR A:505 , HOH A:3736
BINDING SITE FOR RESIDUE NA A1998
22
CC4
SOFTWARE
ALA A:504 , HOH A:3414
BINDING SITE FOR RESIDUE NA A1999
23
CC5
SOFTWARE
SER A:55 , ASP A:60 , PRO A:397 , ARG A:398 , HOH A:3738
BINDING SITE FOR RESIDUE PE4 A2000
24
CC6
SOFTWARE
VAL A:399 , TRP A:431
BINDING SITE FOR RESIDUE PEG A2001
25
CC7
SOFTWARE
GLU A:614 , HOH A:3501 , HOH A:3502
BINDING SITE FOR RESIDUE CA A2002
26
CC8
SOFTWARE
HIS A:565
BINDING SITE FOR RESIDUE CL A2003
27
CC9
SOFTWARE
CD A:1988 , HOH A:3448
BINDING SITE FOR RESIDUE NA A2004
28
DC1
SOFTWARE
ASN A:46
BINDING SITE FOR MONO-SACCHARIDE NAG A1972 BOUND TO ASN A 46
29
DC2
SOFTWARE
ASN A:86 , TYR A:115 , ALA A:116 , THR A:117 , HIS A:123 , ILE A:124 , THR A:127 , ASP A:129 , ASN A:155 , GLY A:157 , HOH A:3707 , HOH A:3708
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1947 THROUGH MAN A1954 BOUND TO ASN A 86
30
DC3
SOFTWARE
ASN A:167 , ALA A:168 , ASP A:170 , HIS A:174 , PRO A:186 , HOH A:3722
BINDING SITE FOR MONO-SACCHARIDE NAG A1973 BOUND TO ASN A 167
31
DC4
SOFTWARE
ASN A:255 , SER A:257 , ASP A:259 , GLN A:294 , SER A:295 , MET A:297 , THR A:298 , VAL A:465 , GLY A:466 , ARG A:473 , ASN A:523 , ALA A:527 , HIS A:530 , LEU A:548 , LEU A:550 , PRO A:551 , SER A:867 , TYR A:868 , ASN A:869 , LYS A:870 , SER A:871 , HOH A:3122 , HOH A:3242 , HOH A:3263 , HOH A:3265 , HOH A:3397 , HOH A:3420 , HOH A:3423 , HOH A:3425 , HOH A:3656 , HOH A:3714 , HOH A:3715 , HOH A:3716 , HOH A:3717 , HOH A:3718 , HOH A:3719 , HOH A:3720 , HOH A:3721
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1961 THROUGH MAN A1971 BOUND TO ASN A 255
32
DC5
SOFTWARE
ASN A:357 , LEU A:544 , GLU A:545 , ARG A:557 , HOH A:3431
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1976 THROUGH NAG A1977 BOUND TO ASN A 357
33
DC6
SOFTWARE
ASP A:456 , PRO A:507 , TYR A:508 , LEU A:510 , GLY A:511 , GLN A:512 , GLU A:514 , ASN A:515 , VAL A:555 , GLU A:556 , TYR A:558 , TYR A:559 , ASN A:560 , HOH A:3418 , HOH A:3709 , HOH A:3710 , HOH A:3711 , HOH A:3712
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1955 THROUGH MAN A1960 BOUND TO ASN A 560
34
DC7
SOFTWARE
PHE A:617 , ASN A:618 , THR A:642 , VAL A:646 , THR A:649 , GLU A:653 , NAG A:1946
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1943 THROUGH BMA A1945 BOUND TO ASN A 618
35
DC8
SOFTWARE
TYR A:181 , PRO A:630 , ALA A:631 , ASN A:637 , ASN A:640 , HOH A:3172 , HOH A:3521 , HOH A:3723 , HOH A:3724 , HOH A:3725
BINDING SITE FOR MONO-SACCHARIDE NAG A1975 BOUND TO ASN A 640
36
DC9
SOFTWARE
ASP A:660 , LYS A:661 , ASN A:667 , TRP A:671 , NAG A:1943 , HOH A:3706
BINDING SITE FOR MONO-SACCHARIDE NAG A1946 BOUND TO ASN A 667
37
EC1
SOFTWARE
ARG A:699 , ASN A:799
BINDING SITE FOR MONO-SACCHARIDE NAG A1974 BOUND TO ASN A 799
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asym.Unit (334 KB)
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