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4CV1
Asym. Unit
Info
Asym.Unit (719 KB)
Biol.Unit 1 (351 KB)
Biol.Unit 2 (353 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S. AUREUS FABI IN COMPLEX WITH NADPH AND CG400549
Authors
:
J. Schiebel, A. Chang, S. Shah, P. J. Tonge, C. Kisker
Date
:
22 Mar 14 (Deposition) - 16 Apr 14 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: E,F,G,H (1x)
Biol. Unit 2: A,B,C,D (1x)
Keywords
:
Enoyl-Acp Reductase, Short-Chain Dehydrogenase/Reductase Superfamily, Fatty Acid Biosynthesis, Lipid Synthesis, Safabi, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Schiebel, A. Chang, S. Shah, Y. Lu, L. Liu, P. Pan, M. W. Hirschbeck, M. Tareilus, S. Eltschkner, W. Yu, J. E. Cummings, S. E. Knudson, G. R. Bommineni, S. G. Walker, R. A. Slayden, C. A. Sotriffer, P. J. Tonge, C. Kisker
Rational Design Of Broad Spectrum Antibacterial Activity Based On A Clinically Relevant Enoyl-Acyl Carrier Protein (Acp) Reductase Inhibitor.
J. Biol. Chem. V. 289 15987 2014
[
close entry info
]
Hetero Components
(5, 29)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
3a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
3b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
3c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
3d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
3e: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPe)
3f: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPf)
3g: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPg)
3h: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPh)
4a: 1-(3-AMINO-2-METHYLBENZYL)-4-[2-(T... (PT6a)
4b: 1-(3-AMINO-2-METHYLBENZYL)-4-[2-(T... (PT6b)
4c: 1-(3-AMINO-2-METHYLBENZYL)-4-[2-(T... (PT6c)
4d: 1-(3-AMINO-2-METHYLBENZYL)-4-[2-(T... (PT6d)
4e: 1-(3-AMINO-2-METHYLBENZYL)-4-[2-(T... (PT6e)
4f: 1-(3-AMINO-2-METHYLBENZYL)-4-[2-(T... (PT6f)
4g: 1-(3-AMINO-2-METHYLBENZYL)-4-[2-(T... (PT6g)
4h: 1-(3-AMINO-2-METHYLBENZYL)-4-[2-(T... (PT6h)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
3
NDP
8
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4
PT6
8
Ligand/Ion
1-(3-AMINO-2-METHYLBENZYL)-4-[2-(THIOPHEN-2-YL)ETHOXY]PYRIDIN-2(1H)-ONE
5
SO4
5
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:202 , GLY A:203 , PHE A:204 , ASN A:205 , THR A:206 , HOH A:2057 , HOH A:2116
BINDING SITE FOR RESIDUE SO4 A1257
02
AC2
SOFTWARE
GLY H:202 , GLY H:203 , PHE H:204 , ASN H:205 , THR H:206 , HOH H:2040 , HOH H:3135
BINDING SITE FOR RESIDUE SO4 H1358
03
AC3
SOFTWARE
SER A:69 , ASP A:70 , GLU A:71 , HOH A:2036 , ARG C:18 , ARG C:194 , LYS C:199
BINDING SITE FOR RESIDUE SO4 A1259
04
AC4
SOFTWARE
GLY B:202 , GLY B:203 , PHE B:204 , ASN B:205 , THR B:206
BINDING SITE FOR RESIDUE SO4 B1257
05
AC5
SOFTWARE
VAL E:201 , GLY E:202 , GLY E:203 , PHE E:204 , ASN E:205 , THR E:206 , HOH E:2115
BINDING SITE FOR RESIDUE SO4 E1257
06
AC6
SOFTWARE
GLY B:140 , ASN B:182 , ARG B:184
BINDING SITE FOR RESIDUE EDO B1258
07
AC7
SOFTWARE
GLY H:140 , ASN H:182 , ARG H:184
BINDING SITE FOR RESIDUE EDO H1257
08
AC8
SOFTWARE
GLY G:202 , GLY G:203 , PHE G:204 , ASN G:205 , THR G:206
BINDING SITE FOR RESIDUE EDO G1257
09
AC9
SOFTWARE
ASN C:56 , ALA G:0
BINDING SITE FOR RESIDUE EDO G1358
10
BC1
SOFTWARE
HOH A:2051 , GLY D:203 , PHE D:204 , ASN D:205 , THR D:206
BINDING SITE FOR RESIDUE EDO A1270
11
BC2
SOFTWARE
GLY C:140 , ASN C:182 , ARG C:184
BINDING SITE FOR RESIDUE EDO C1270
12
BC3
SOFTWARE
ARG F:40 , ARG F:43
BINDING SITE FOR RESIDUE CL F1357
13
BC4
SOFTWARE
GLY A:13 , ILE A:14 , ALA A:15 , SER A:19 , ILE A:20 , ARG A:40 , ILE A:65 , ASP A:66 , VAL A:67 , SER A:93 , ILE A:94 , ALA A:95 , ILE A:120 , THR A:145 , THR A:146 , TYR A:147 , LYS A:164 , ALA A:190 , GLY A:191 , PRO A:192 , ILE A:193 , THR A:195 , SER A:197 , PT6 A:1261 , HOH A:2004 , HOH A:2006 , HOH A:2019
BINDING SITE FOR RESIDUE NDP A1260
14
BC5
SOFTWARE
GLY H:13 , ILE H:14 , ALA H:15 , SER H:19 , ILE H:20 , ARG H:40 , LYS H:41 , ILE H:65 , ASP H:66 , VAL H:67 , SER H:93 , ILE H:94 , ALA H:95 , ILE H:120 , THR H:145 , THR H:146 , TYR H:147 , LYS H:164 , ALA H:190 , PRO H:192 , ILE H:193 , THR H:195 , SER H:197 , PT6 H:1259 , HOH H:2005 , HOH H:2006 , HOH H:2008
BINDING SITE FOR RESIDUE NDP H1258
15
BC6
SOFTWARE
GLY G:13 , ILE G:14 , ALA G:15 , SER G:19 , ILE G:20 , ARG G:40 , LYS G:41 , SER G:44 , ILE G:65 , ASP G:66 , VAL G:67 , SER G:93 , ILE G:94 , ALA G:95 , ILE G:120 , THR G:145 , THR G:146 , TYR G:147 , LYS G:164 , ALA G:190 , PRO G:192 , ILE G:193 , THR G:195 , SER G:197 , PT6 G:1260 , HOH G:2004 , HOH G:2005 , HOH G:2006
BINDING SITE FOR RESIDUE NDP G1259
16
BC7
SOFTWARE
GLY F:13 , ILE F:14 , ALA F:15 , SER F:19 , ILE F:20 , ARG F:40 , LYS F:41 , ILE F:65 , ASP F:66 , VAL F:67 , SER F:93 , ILE F:94 , ALA F:95 , ILE F:120 , THR F:145 , THR F:146 , TYR F:147 , LYS F:164 , ALA F:190 , PRO F:192 , ILE F:193 , THR F:195 , SER F:197 , PHE F:204 , PT6 F:1259 , HOH F:2005 , HOH F:2006 , HOH F:2008 , HOH F:2019 , HOH F:2111
BINDING SITE FOR RESIDUE NDP F1258
17
BC8
SOFTWARE
GLY E:13 , ALA E:15 , SER E:19 , ILE E:20 , ARG E:40 , LYS E:41 , ILE E:65 , ASP E:66 , VAL E:67 , SER E:93 , ILE E:94 , ALA E:95 , ILE E:120 , THR E:145 , THR E:146 , TYR E:147 , LYS E:164 , ALA E:190 , GLY E:191 , PRO E:192 , ILE E:193 , THR E:195 , SER E:197 , PT6 E:1260 , HOH E:2006 , HOH E:2007 , HOH E:2008 , HOH E:2009 , HOH E:2010 , HOH E:2022 , HOH E:2138
BINDING SITE FOR RESIDUE NDP E1259
18
BC9
SOFTWARE
GLY D:13 , ILE D:14 , ALA D:15 , SER D:19 , ILE D:20 , ARG D:40 , LYS D:41 , ILE D:65 , ASP D:66 , VAL D:67 , SER D:93 , ILE D:94 , ALA D:95 , ILE D:120 , THR D:145 , THR D:146 , TYR D:147 , LYS D:164 , ALA D:190 , GLY D:191 , PRO D:192 , ILE D:193 , THR D:195 , SER D:197 , PT6 D:1258 , HOH D:2003 , HOH D:2004 , HOH D:2005 , HOH D:2087
BINDING SITE FOR RESIDUE NDP D1257
19
CC1
SOFTWARE
GLY C:13 , ILE C:14 , ALA C:15 , SER C:19 , ILE C:20 , ARG C:40 , ILE C:65 , ASP C:66 , VAL C:67 , SER C:93 , ILE C:94 , ALA C:95 , ILE C:120 , THR C:145 , THR C:146 , TYR C:147 , LYS C:164 , ALA C:190 , GLY C:191 , PRO C:192 , ILE C:193 , THR C:195 , SER C:197 , PT6 C:1259 , HOH C:2014 , HOH C:2016 , HOH C:2017 , HOH C:2030 , HOH C:2031
BINDING SITE FOR RESIDUE NDP C1258
20
CC2
SOFTWARE
GLY B:13 , ILE B:14 , ALA B:15 , SER B:19 , ILE B:20 , ARG B:40 , LYS B:41 , SER B:44 , ILE B:65 , ASP B:66 , VAL B:67 , SER B:93 , ILE B:94 , ALA B:95 , ILE B:120 , THR B:145 , THR B:146 , TYR B:147 , LYS B:164 , ALA B:190 , GLY B:191 , PRO B:192 , ILE B:193 , THR B:195 , LEU B:196 , SER B:197 , PT6 B:1260 , HOH B:2008 , HOH B:2009 , HOH B:2010 , HOH B:2011
BINDING SITE FOR RESIDUE NDP B1259
21
CC3
SOFTWARE
ALA A:95 , PHE A:96 , ALA A:97 , LEU A:102 , TYR A:147 , GLN A:155 , TYR A:157 , MET A:160 , SER A:197 , VAL A:201 , GLY A:202 , PHE A:204 , ILE A:207 , NDP A:1260
BINDING SITE FOR RESIDUE PT6 A1261
22
CC4
SOFTWARE
ALA B:95 , PHE B:96 , ALA B:97 , LEU B:102 , TYR B:147 , GLN B:155 , TYR B:157 , SER B:197 , PHE B:204 , NDP B:1259
BINDING SITE FOR RESIDUE PT6 B1260
23
CC5
SOFTWARE
ALA C:95 , PHE C:96 , ALA C:97 , TYR C:147 , VAL C:154 , GLN C:155 , TYR C:157 , MET C:160 , SER C:197 , PHE C:204 , ILE C:207 , NDP C:1258
BINDING SITE FOR RESIDUE PT6 C1259
24
CC6
SOFTWARE
ALA D:95 , PHE D:96 , ALA D:97 , LEU D:102 , TYR D:147 , GLN D:155 , TYR D:157 , SER D:197 , PHE D:204 , ILE D:207 , NDP D:1257
BINDING SITE FOR RESIDUE PT6 D1258
25
CC7
SOFTWARE
ALA E:95 , PHE E:96 , ALA E:97 , MET E:99 , TYR E:147 , GLN E:155 , TYR E:157 , SER E:197 , PHE E:204 , NDP E:1259
BINDING SITE FOR RESIDUE PT6 E1260
26
CC8
SOFTWARE
ALA F:95 , PHE F:96 , ALA F:97 , LEU F:102 , TYR F:147 , GLN F:155 , TYR F:157 , MET F:160 , SER F:197 , VAL F:201 , GLY F:202 , PHE F:204 , ILE F:207 , NDP F:1258
BINDING SITE FOR RESIDUE PT6 F1259
27
CC9
SOFTWARE
ALA G:95 , PHE G:96 , ALA G:97 , MET G:99 , LEU G:102 , TYR G:147 , GLN G:155 , TYR G:157 , MET G:160 , SER G:197 , GLY G:202 , PHE G:204 , ILE G:207 , NDP G:1259
BINDING SITE FOR RESIDUE PT6 G1260
28
DC1
SOFTWARE
ALA H:95 , PHE H:96 , ALA H:97 , LEU H:102 , TYR H:147 , GLN H:155 , TYR H:157 , MET H:160 , SER H:197 , GLY H:202 , PHE H:204 , NDP H:1258
BINDING SITE FOR RESIDUE PT6 H1259
29
DC2
SOFTWARE
GLU E:42 , ARG E:43 , ARG F:103
BINDING SITE FOR RESIDUE EDO E1261
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Asym.Unit (719 KB)
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