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4CU4
Biol. Unit 1
Info
Asym.Unit (138 KB)
Biol.Unit 1 (129 KB)
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(1)
Title
:
FHUA FROM E. COLI IN COMPLEX WITH THE LASSO PEPTIDE MICROCIN J25 (MCCJ25)
Authors
:
I. Mathavan, S. Rebuffat, K. Beis
Date
:
17 Mar 14 (Deposition) - 09 Apr 14 (Release) - 30 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transport Protein-Antibiotic Complex, Lipopolysaccharide, Detergent
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Mathavan, S. Zirah, S. Mehmood, H. G. Choudhury, C. Goulard, Y. Li, C. V. Robinson, S. Rebuffat, K. Beis
Structural Basis For Hijacking Siderophore Receptors By Antimicrobial Lasso Peptides.
Nat. Chem. Biol. V. 10 340 2014
[
close entry info
]
Hetero Components
(11, 37)
Info
All Hetero Components
01a: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE (3PHa)
02a: LAURIC ACID (DAOa)
03a: DIPHOSPHATE (DPOa)
03b: DIPHOSPHATE (DPOb)
04a: 3-HYDROXY-TETRADECANOIC ACID (FTTa)
04b: 3-HYDROXY-TETRADECANOIC ACID (FTTb)
04c: 3-HYDROXY-TETRADECANOIC ACID (FTTc)
04d: 3-HYDROXY-TETRADECANOIC ACID (FTTd)
05a: D-GLUCOSAMINE (GCSa)
06a: L-GLYCERO-D-MANNO-HEPTOPYRANOSE (GMHa)
06b: L-GLYCERO-D-MANNO-HEPTOPYRANOSE (GMHb)
07a: 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACI... (KDOa)
07b: 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACI... (KDOb)
08a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
08b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
08c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
08d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
08e: LAURYL DIMETHYLAMINE-N-OXIDE (LDAe)
08f: LAURYL DIMETHYLAMINE-N-OXIDE (LDAf)
08g: LAURYL DIMETHYLAMINE-N-OXIDE (LDAg)
08h: LAURYL DIMETHYLAMINE-N-OXIDE (LDAh)
08i: LAURYL DIMETHYLAMINE-N-OXIDE (LDAi)
08j: LAURYL DIMETHYLAMINE-N-OXIDE (LDAj)
08k: LAURYL DIMETHYLAMINE-N-OXIDE (LDAk)
08l: LAURYL DIMETHYLAMINE-N-OXIDE (LDAl)
08m: LAURYL DIMETHYLAMINE-N-OXIDE (LDAm)
08n: LAURYL DIMETHYLAMINE-N-OXIDE (LDAn)
08o: LAURYL DIMETHYLAMINE-N-OXIDE (LDAo)
08p: LAURYL DIMETHYLAMINE-N-OXIDE (LDAp)
08q: LAURYL DIMETHYLAMINE-N-OXIDE (LDAq)
08r: LAURYL DIMETHYLAMINE-N-OXIDE (LDAr)
08s: LAURYL DIMETHYLAMINE-N-OXIDE (LDAs)
08t: LAURYL DIMETHYLAMINE-N-OXIDE (LDAt)
09a: MYRISTIC ACID (MYRa)
10a: 2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRAN... (PA1a)
11a: PHOSPHATE ION (PO4a)
11b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3PH
1
Ligand/Ion
1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
2
DAO
1
Ligand/Ion
LAURIC ACID
3
DPO
2
Ligand/Ion
DIPHOSPHATE
4
FTT
4
Ligand/Ion
3-HYDROXY-TETRADECANOIC ACID
5
GCS
1
Ligand/Ion
D-GLUCOSAMINE
6
GMH
2
Ligand/Ion
L-GLYCERO-D-MANNO-HEPTOPYRANOSE
7
KDO
2
Ligand/Ion
3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
8
LDA
20
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
9
MYR
1
Ligand/Ion
MYRISTIC ACID
10
PA1
1
Ligand/Ion
2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE
11
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:164 , THR A:176 , PHE A:178 , TYR A:213 , PHE A:235
BINDING SITE FOR RESIDUE LDA A1726
02
AC2
SOFTWARE
THR A:443 , TRP A:466 , ASP A:468 , FTT A:1010 , DPO A:2000
BINDING SITE FOR RESIDUE LDA A1727
03
AC3
SOFTWARE
TYR A:464 , LYS A:485 , LDA A:1739 , 3PH A:1744 , LDA A:1746 , HOH A:3122
BINDING SITE FOR RESIDUE LDA A1728
04
AC4
SOFTWARE
GLY A:461 , TRP A:489
BINDING SITE FOR RESIDUE LDA A1729
05
AC5
SOFTWARE
PHE A:505 , THR A:555
BINDING SITE FOR RESIDUE LDA A1730
06
AC6
SOFTWARE
VAL A:536 , TYR A:538 , ARG A:543
BINDING SITE FOR RESIDUE LDA A1731
07
AC7
SOFTWARE
PRO A:223 , ASP A:224 , LDA A:1736 , 3PH A:1744
BINDING SITE FOR RESIDUE LDA A1732
08
AC8
SOFTWARE
TYR A:190 , TRP A:221
BINDING SITE FOR RESIDUE LDA A1733
09
AC9
SOFTWARE
PHE A:365 , ALA A:366 , ASP A:635
BINDING SITE FOR RESIDUE LDA A1734
10
BC1
SOFTWARE
THR A:293 , SER A:363
BINDING SITE FOR RESIDUE LDA A1735
11
BC2
SOFTWARE
PHE A:294 , LDA A:1732 , 3PH A:1744
BINDING SITE FOR RESIDUE LDA A1736
12
BC3
SOFTWARE
PRO A:503
BINDING SITE FOR RESIDUE LDA A1737
13
BC4
SOFTWARE
TYR A:495
BINDING SITE FOR RESIDUE LDA A1738
14
BC5
SOFTWARE
VAL A:447 , GLY A:462 , TYR A:464 , LDA A:1728
BINDING SITE FOR RESIDUE LDA A1739
15
BC6
SOFTWARE
ASP A:185 , TYR A:190
BINDING SITE FOR RESIDUE LDA A1740
16
BC7
SOFTWARE
TRP A:489 , GLY A:491 , VAL A:493 , PHE A:505 , TYR A:507 , TYR A:532
BINDING SITE FOR RESIDUE LDA A1741
17
BC8
SOFTWARE
LDA A:1743
BINDING SITE FOR RESIDUE LDA A1742
18
BC9
SOFTWARE
TYR A:532 , LDA A:1742
BINDING SITE FOR RESIDUE LDA A1743
19
CC1
SOFTWARE
HIS A:288 , PHE A:290 , ASN A:291 , PHE A:294 , VAL A:378 , LDA A:1728 , LDA A:1732 , LDA A:1736
BINDING SITE FOR RESIDUE 3PH A1744
20
CC2
SOFTWARE
FTT A:1013 , LDA A:1746
BINDING SITE FOR RESIDUE LDA A1745
21
CC3
SOFTWARE
LDA A:1728 , LDA A:1745
BINDING SITE FOR RESIDUE LDA A1746
22
CC4
SOFTWARE
PHE A:231 , VAL A:282 , TYR A:284 , GLN A:298 , PHE A:302 , GLU A:304 , LYS A:351 , GLN A:353 , PHE A:355 , PHE A:380 , ARG A:382 , ARG A:384 , ASP A:386 , LEU A:437 , LYS A:439 , LYS A:441 , ARG A:474 , LDA A:1727 , LDA A:1745 , HOH A:3107 , HOH A:3122 , HOH A:3167
BINDING SITE FOR POLY-SACCHARIDE RESIDUES PA1 A1000 THROUGH PO4 A2005
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TONB_DEPENDENT_REC_2 (A:708-725)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TONB_DEPENDENT_REC_2
PS01156
TonB-dependent receptor proteins signature 2.
FHUA_ECOLI
730-747
1
A:708-725
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4cu4a_ (A:)
2a: SCOP_d4cu4b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
Porins
(99)
Family
:
Ligand-gated protein channel
(29)
Protein domain
:
automated matches
(1)
Escherichia coli [TaxId: 511145]
(1)
1a
d4cu4a_
A:
Class
:
Peptides
(792)
Fold
:
Macrocyclic bacteriocins
(5)
Superfamily
:
Macrocyclic bacteriocins
(5)
Family
:
Microcin J25
(4)
Protein domain
:
Microcin J25
(4)
Escherichia coli [TaxId: 1403831]
(1)
2a
d4cu4b_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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