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4CU4
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (129 KB)
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(1)
Title
:
FHUA FROM E. COLI IN COMPLEX WITH THE LASSO PEPTIDE MICROCIN J25 (MCCJ25)
Authors
:
I. Mathavan, S. Rebuffat, K. Beis
Date
:
17 Mar 14 (Deposition) - 09 Apr 14 (Release) - 30 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transport Protein-Antibiotic Complex, Lipopolysaccharide, Detergent
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Mathavan, S. Zirah, S. Mehmood, H. G. Choudhury, C. Goulard, Y. Li, C. V. Robinson, S. Rebuffat, K. Beis
Structural Basis For Hijacking Siderophore Receptors By Antimicrobial Lasso Peptides.
Nat. Chem. Biol. V. 10 340 2014
[
close entry info
]
Hetero Components
(11, 37)
Info
All Hetero Components
01a: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE (3PHa)
02a: LAURIC ACID (DAOa)
03a: DIPHOSPHATE (DPOa)
03b: DIPHOSPHATE (DPOb)
04a: 3-HYDROXY-TETRADECANOIC ACID (FTTa)
04b: 3-HYDROXY-TETRADECANOIC ACID (FTTb)
04c: 3-HYDROXY-TETRADECANOIC ACID (FTTc)
04d: 3-HYDROXY-TETRADECANOIC ACID (FTTd)
05a: D-GLUCOSAMINE (GCSa)
06a: L-GLYCERO-D-MANNO-HEPTOPYRANOSE (GMHa)
06b: L-GLYCERO-D-MANNO-HEPTOPYRANOSE (GMHb)
07a: 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACI... (KDOa)
07b: 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACI... (KDOb)
08a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
08b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
08c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
08d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
08e: LAURYL DIMETHYLAMINE-N-OXIDE (LDAe)
08f: LAURYL DIMETHYLAMINE-N-OXIDE (LDAf)
08g: LAURYL DIMETHYLAMINE-N-OXIDE (LDAg)
08h: LAURYL DIMETHYLAMINE-N-OXIDE (LDAh)
08i: LAURYL DIMETHYLAMINE-N-OXIDE (LDAi)
08j: LAURYL DIMETHYLAMINE-N-OXIDE (LDAj)
08k: LAURYL DIMETHYLAMINE-N-OXIDE (LDAk)
08l: LAURYL DIMETHYLAMINE-N-OXIDE (LDAl)
08m: LAURYL DIMETHYLAMINE-N-OXIDE (LDAm)
08n: LAURYL DIMETHYLAMINE-N-OXIDE (LDAn)
08o: LAURYL DIMETHYLAMINE-N-OXIDE (LDAo)
08p: LAURYL DIMETHYLAMINE-N-OXIDE (LDAp)
08q: LAURYL DIMETHYLAMINE-N-OXIDE (LDAq)
08r: LAURYL DIMETHYLAMINE-N-OXIDE (LDAr)
08s: LAURYL DIMETHYLAMINE-N-OXIDE (LDAs)
08t: LAURYL DIMETHYLAMINE-N-OXIDE (LDAt)
09a: MYRISTIC ACID (MYRa)
10a: 2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRAN... (PA1a)
11a: PHOSPHATE ION (PO4a)
11b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3PH
1
Ligand/Ion
1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
2
DAO
1
Ligand/Ion
LAURIC ACID
3
DPO
2
Ligand/Ion
DIPHOSPHATE
4
FTT
4
Ligand/Ion
3-HYDROXY-TETRADECANOIC ACID
5
GCS
1
Ligand/Ion
D-GLUCOSAMINE
6
GMH
2
Ligand/Ion
L-GLYCERO-D-MANNO-HEPTOPYRANOSE
7
KDO
2
Ligand/Ion
3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
8
LDA
20
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
9
MYR
1
Ligand/Ion
MYRISTIC ACID
10
PA1
1
Ligand/Ion
2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE
11
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:164 , THR A:176 , PHE A:178 , TYR A:213 , PHE A:235
BINDING SITE FOR RESIDUE LDA A1726
02
AC2
SOFTWARE
THR A:443 , TRP A:466 , ASP A:468 , FTT A:1010 , DPO A:2000
BINDING SITE FOR RESIDUE LDA A1727
03
AC3
SOFTWARE
TYR A:464 , LYS A:485 , LDA A:1739 , 3PH A:1744 , LDA A:1746 , HOH A:3122
BINDING SITE FOR RESIDUE LDA A1728
04
AC4
SOFTWARE
GLY A:461 , TRP A:489
BINDING SITE FOR RESIDUE LDA A1729
05
AC5
SOFTWARE
PHE A:505 , THR A:555
BINDING SITE FOR RESIDUE LDA A1730
06
AC6
SOFTWARE
VAL A:536 , TYR A:538 , ARG A:543
BINDING SITE FOR RESIDUE LDA A1731
07
AC7
SOFTWARE
PRO A:223 , ASP A:224 , LDA A:1736 , 3PH A:1744
BINDING SITE FOR RESIDUE LDA A1732
08
AC8
SOFTWARE
TYR A:190 , TRP A:221
BINDING SITE FOR RESIDUE LDA A1733
09
AC9
SOFTWARE
PHE A:365 , ALA A:366 , ASP A:635
BINDING SITE FOR RESIDUE LDA A1734
10
BC1
SOFTWARE
THR A:293 , SER A:363
BINDING SITE FOR RESIDUE LDA A1735
11
BC2
SOFTWARE
PHE A:294 , LDA A:1732 , 3PH A:1744
BINDING SITE FOR RESIDUE LDA A1736
12
BC3
SOFTWARE
PRO A:503
BINDING SITE FOR RESIDUE LDA A1737
13
BC4
SOFTWARE
TYR A:495
BINDING SITE FOR RESIDUE LDA A1738
14
BC5
SOFTWARE
VAL A:447 , GLY A:462 , TYR A:464 , LDA A:1728
BINDING SITE FOR RESIDUE LDA A1739
15
BC6
SOFTWARE
ASP A:185 , TYR A:190
BINDING SITE FOR RESIDUE LDA A1740
16
BC7
SOFTWARE
TRP A:489 , GLY A:491 , VAL A:493 , PHE A:505 , TYR A:507 , TYR A:532
BINDING SITE FOR RESIDUE LDA A1741
17
BC8
SOFTWARE
LDA A:1743
BINDING SITE FOR RESIDUE LDA A1742
18
BC9
SOFTWARE
TYR A:532 , LDA A:1742
BINDING SITE FOR RESIDUE LDA A1743
19
CC1
SOFTWARE
HIS A:288 , PHE A:290 , ASN A:291 , PHE A:294 , VAL A:378 , LDA A:1728 , LDA A:1732 , LDA A:1736
BINDING SITE FOR RESIDUE 3PH A1744
20
CC2
SOFTWARE
FTT A:1013 , LDA A:1746
BINDING SITE FOR RESIDUE LDA A1745
21
CC3
SOFTWARE
LDA A:1728 , LDA A:1745
BINDING SITE FOR RESIDUE LDA A1746
22
CC4
SOFTWARE
PHE A:231 , VAL A:282 , TYR A:284 , GLN A:298 , PHE A:302 , GLU A:304 , LYS A:351 , GLN A:353 , PHE A:355 , PHE A:380 , ARG A:382 , ARG A:384 , ASP A:386 , LEU A:437 , LYS A:439 , LYS A:441 , ARG A:474 , LDA A:1727 , LDA A:1745 , HOH A:3107 , HOH A:3122 , HOH A:3167
BINDING SITE FOR POLY-SACCHARIDE RESIDUES PA1 A1000 THROUGH PO4 A2005
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TONB_DEPENDENT_REC_2 (A:708-725)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TONB_DEPENDENT_REC_2
PS01156
TonB-dependent receptor proteins signature 2.
FHUA_ECOLI
730-747
1
A:708-725
[
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Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4cu4a_ (A:)
2a: SCOP_d4cu4b_ (B:)
View:
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Label:
Classes
(
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(
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Folds
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
Porins
(99)
Family
:
Ligand-gated protein channel
(29)
Protein domain
:
automated matches
(1)
Escherichia coli [TaxId: 511145]
(1)
1a
d4cu4a_
A:
Class
:
Peptides
(792)
Fold
:
Macrocyclic bacteriocins
(5)
Superfamily
:
Macrocyclic bacteriocins
(5)
Family
:
Microcin J25
(4)
Protein domain
:
Microcin J25
(4)
Escherichia coli [TaxId: 1403831]
(1)
2a
d4cu4b_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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