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4CR7
Biol. Unit 6
Info
Asym.Unit (619 KB)
Biol.Unit 1 (157 KB)
Biol.Unit 2 (159 KB)
Biol.Unit 3 (159 KB)
Biol.Unit 4 (159 KB)
Biol.Unit 5 (159 KB)
Biol.Unit 6 (159 KB)
Biol.Unit 7 (161 KB)
Biol.Unit 8 (159 KB)
Biol.Unit 9 (159 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-ACETYL-D-MANNOSAMINE DEHYDROGENASE WITH N-ACETYLMANNOSAMINE
Authors
:
F. Gil-Ortiz, A. Sola-Carvajal, F. Garcia-Carmona, A. Sanchez-Ferre V. Rubio
Date
:
25 Feb 14 (Deposition) - 09 Jul 14 (Release) - 03 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,H,K,N (1x)
Biol. Unit 2: A,H,K,N (1x)
Biol. Unit 3: A,H,K,N (1x)
Biol. Unit 4: B,G,L,M (1x)
Biol. Unit 5: B,G,L,M (1x)
Biol. Unit 6: D,F,I,O (1x)
Biol. Unit 7: D,F,I,O (1x)
Biol. Unit 8: C,E,J,P (1x)
Biol. Unit 9: C,E,J,P (1x)
Keywords
:
Oxidoreductase, N-Acetyl-D-Mannosamine Dehydrogenase, Short-Chain Dehydrogenase/Reductase, Substrate Selectivity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Sola-Carvajal, F. Gil-Ortiz, F. Garcia-Carmona, V. Rubio, A. Sanchez-Ferrer
Crystal Structures And Functional Studies Clarify Substrate Selectivity And Catalytic Residues For The Unique Orphan Enzyme N-Acetyl-D-Mannosamine Dehydrogenase.
Biochem. J. V. 462 499 2014
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3a)
1b: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3b)
1c: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3c)
1d: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3d)
1e: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3e)
1f: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3f)
1g: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3g)
1h: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3h)
1i: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3i)
1j: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3j)
1k: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3k)
1l: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3l)
1m: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3m)
1n: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3n)
1o: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3o)
1p: 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MA... (BM3p)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
3a: TETRAETHYLENE GLYCOL (PG4a)
3b: TETRAETHYLENE GLYCOL (PG4b)
3c: TETRAETHYLENE GLYCOL (PG4c)
3d: TETRAETHYLENE GLYCOL (PG4d)
3e: TETRAETHYLENE GLYCOL (PG4e)
3f: TETRAETHYLENE GLYCOL (PG4f)
3g: TETRAETHYLENE GLYCOL (PG4g)
3h: TETRAETHYLENE GLYCOL (PG4h)
3i: TETRAETHYLENE GLYCOL (PG4i)
3j: TETRAETHYLENE GLYCOL (PG4j)
3k: TETRAETHYLENE GLYCOL (PG4k)
3l: TETRAETHYLENE GLYCOL (PG4l)
3m: TETRAETHYLENE GLYCOL (PG4m)
3n: TETRAETHYLENE GLYCOL (PG4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BM3
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MANNOPYRANOSE
2
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
3
PG4
5
Ligand/Ion
TETRAETHYLENE GLYCOL
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC7 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC5 (SOFTWARE)
10: DC2 (SOFTWARE)
11: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR D:253 , SER D:259 , HOH D:2053 , ARG F:178 , THR F:253 , SER F:259 , PG4 F:1276
BINDING SITE FOR RESIDUE PG4 F1272
02
AC2
SOFTWARE
SER F:156 , MET F:175 , SER O:156 , MET O:175
BINDING SITE FOR RESIDUE PG4 F1273
03
AC5
SOFTWARE
GLU F:160 , GLU F:162 , BM3 F:1275 , MET I:266 , ARG I:271
BINDING SITE FOR RESIDUE PG4 F1274
04
AC8
SOFTWARE
MET F:266 , BM3 I:1273 , HOH I:2028
BINDING SITE FOR RESIDUE PG4 I1272
05
BC7
SOFTWARE
LYS D:98 , GLY D:99 , SER D:153 , ASN D:155 , GLU D:160 , TYR D:166 , PRO D:198 , TYR D:208 , HOH D:2027 , PHE O:263
BINDING SITE FOR RESIDUE BM3 D1272
06
BC9
SOFTWARE
GLY F:99 , ASN F:155 , GLU F:160 , TYR F:166 , GLY F:197 , PRO F:198 , TYR F:208 , PG4 F:1274 , HOH F:2029 , HOH F:2031
BINDING SITE FOR RESIDUE BM3 F1275
07
CC1
SOFTWARE
PG4 F:1272 , ARG I:178 , THR O:253 , SER O:259
BINDING SITE FOR RESIDUE PG4 F1276
08
CC2
SOFTWARE
THR I:253 , SER I:259
BINDING SITE FOR RESIDUE PG4 F1277
09
CC5
SOFTWARE
LYS I:98 , GLY I:99 , ASN I:155 , GLU I:160 , TYR I:166 , PRO I:196 , GLY I:197 , PRO I:198 , TYR I:208 , PG4 I:1272 , HOH I:2025 , HOH I:2028
BINDING SITE FOR RESIDUE BM3 I1273
10
DC2
SOFTWARE
LYS O:98 , GLY O:99 , ASN O:155 , GLU O:160 , TYR O:166 , TYR O:208 , HOH O:2019
BINDING SITE FOR RESIDUE BM3 O1272
11
DC7
SOFTWARE
MET D:158 , GLU D:220 , LEU D:258 , SER D:259 , MET D:261 , HOH D:2062 , MET O:158 , GLU O:220 , LEU O:258 , MET O:261 , HOH O:2030
BINDING SITE FOR RESIDUE MAN D1273
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (D:153-181,F:153-181,I:153-181,O:15...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
DHMA_FLAS1
153-181
4
-
-
-
D:153-181
-
F:153-181
-
-
I:153-181
-
-
-
-
-
O:153-181
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain I
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (619 KB)
Header - Asym.Unit
Biol.Unit 1 (157 KB)
Header - Biol.Unit 1
Biol.Unit 2 (159 KB)
Header - Biol.Unit 2
Biol.Unit 3 (159 KB)
Header - Biol.Unit 3
Biol.Unit 4 (159 KB)
Header - Biol.Unit 4
Biol.Unit 5 (159 KB)
Header - Biol.Unit 5
Biol.Unit 6 (159 KB)
Header - Biol.Unit 6
Biol.Unit 7 (161 KB)
Header - Biol.Unit 7
Biol.Unit 8 (159 KB)
Header - Biol.Unit 8
Biol.Unit 9 (159 KB)
Header - Biol.Unit 9
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