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4CQX
Asym. Unit
Info
Asym.Unit (519 KB)
Biol.Unit 1 (506 KB)
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(1)
Title
:
H5 (TYTY) DEL133/ILE155THR MUTANT HAEMAGGLUTININ IN COMPLEX WITH HUMAN RECEPTOR ANALOGUE 6'SLN
Authors
:
X. Xiong, H. Xiao, S. R. Martin, P. J. Coombs, J. Liu, P. J. Collins, S. G. V P. A. Walker, Y. P. Lin, J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Date
:
21 Feb 14 (Deposition) - 28 May 14 (Release) - 11 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Viral Protein, Sialic Acid, Glycoprotein, Virus Receptor, Avian Flu, Sialyllactosamine, 3Sln, 3'Sln, 6Sln, 6'Sln, Lsta
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Xiong, H. Xiao, S. R. Martin, P. J. Coombs, J. Liu, P. J. Collins, S. G. Vachieri, P. A. Walker, Y. P. Lin, J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Enhanced Human Receptor Binding By H5 Haemagglutinins.
Virology V. 456 179 2014
[
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Hetero Components
(4, 23)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
4a: O-SIALIC ACID (SIAa)
4b: O-SIALIC ACID (SIAb)
4c: O-SIALIC ACID (SIAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PO4
5
Ligand/Ion
PHOSPHATE ION
4
SIA
3
Ligand/Ion
O-SIALIC ACID
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:121 , TRP A:122 , SER A:123 , ASP A:124 , HIS A:125
BINDING SITE FOR RESIDUE PO4 A1327
02
AC2
SOFTWARE
ALA A:58 , ASP A:88 , ASN A:94 , PHE A:95 , TYR A:98
BINDING SITE FOR RESIDUE PO4 A1328
03
AC3
SOFTWARE
SER C:121 , TRP C:122 , SER C:123 , ASP C:124 , HIS C:125 , ARG C:161
BINDING SITE FOR RESIDUE PO4 C1326
04
AC4
SOFTWARE
ASP C:88 , LEU C:89 , PHE C:95 , TYR C:98
BINDING SITE FOR RESIDUE PO4 C1327
05
AC5
SOFTWARE
LEU E:33 , GLU E:34 , LYS E:35 , THR E:36 , MET E:288
BINDING SITE FOR RESIDUE PO4 E1328
06
AC6
SOFTWARE
ASN A:11 , HOH A:2015 , HOH A:2017 , HOH A:2180
BINDING SITE FOR MONO-SACCHARIDE NAG A1321 BOUND TO ASN A 11
07
AC7
SOFTWARE
ASN A:23 , HOH A:2024 , HOH A:2181
BINDING SITE FOR MONO-SACCHARIDE NAG A1322 BOUND TO ASN A 23
08
AC8
SOFTWARE
ASN A:164 , ASN A:235 , ALA A:237
BINDING SITE FOR MONO-SACCHARIDE NAG A1323 BOUND TO ASN A 164
09
AC9
SOFTWARE
GLN C:15 , ASN C:23
BINDING SITE FOR MONO-SACCHARIDE NAG C1321 BOUND TO ASN C 23
10
BC1
SOFTWARE
SER A:216 , ASN C:164 , ASN C:235 , ALA C:237 , HOH C:2125 , HOH C:2194
BINDING SITE FOR MONO-SACCHARIDE NAG C1322 BOUND TO ASN C 164
11
BC2
SOFTWARE
ASN E:11 , HOH E:2007
BINDING SITE FOR MONO-SACCHARIDE NAG E1321 BOUND TO ASN E 11
12
BC3
SOFTWARE
ASN E:23 , HOH E:2214
BINDING SITE FOR MONO-SACCHARIDE NAG E1322 BOUND TO ASN E 23
13
BC4
SOFTWARE
SER C:216 , ASN E:164 , ASN E:235 , HOH E:2144
BINDING SITE FOR MONO-SACCHARIDE NAG E1323 BOUND TO ASN E 164
14
BC5
SOFTWARE
ASN E:285 , HOH E:2215
BINDING SITE FOR MONO-SACCHARIDE NAG E1324 BOUND TO ASN E 285
15
BC6
SOFTWARE
TYR A:91 , GLY A:129 , VAL A:130 , SER A:131 , SER A:132 , TRP A:148 , HIS A:178 , GLU A:185 , LEU A:189 , LYS A:217 , GLY A:220 , GLN A:221 , HOH A:2078 , HOH A:2103 , HOH A:2104 , HOH A:2182
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA A1324 THROUGH NAG A1326
16
BC7
SOFTWARE
TYR A:91 , GLY A:129 , VAL A:130 , SER A:131 , SER A:132 , TRP A:148 , ASN A:164 , HIS A:178 , GLU A:185 , LEU A:189 , LYS A:217 , GLY A:220 , GLN A:221 , ASN A:235 , ALA A:237 , HOH A:2078 , HOH A:2103 , HOH A:2104 , HOH A:2182 , TYR C:91 , SER C:121 , TRP C:122 , SER C:123 , ASP C:124 , HIS C:125 , GLY C:129 , VAL C:130 , SER C:131 , SER C:132 , TRP C:148 , ARG C:161 , HIS C:178 , GLU C:185 , LEU C:189 , LYS C:217 , GLY C:220 , GLN C:221 , HOH C:2068 , HOH C:2103 , HOH C:2104 , HOH C:2139 , HOH C:2195
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA C1323 THROUGH NAG C1325
17
BC8
SOFTWARE
ASP C:88 , LEU C:89 , PHE C:95 , TYR C:98 , SER C:121 , TRP C:122 , SER C:123 , ASP C:124 , HIS C:125 , ARG C:161 , LYS C:217 , GLY C:220 , GLN C:221 , SIA C:1323 , TYR E:91 , GLY E:129 , VAL E:130 , SER E:131 , SER E:132 , TRP E:148 , HIS E:178 , ASN E:181 , GLU E:185 , LEU E:189 , GLY E:220 , GLN E:221 , ASN E:285 , HOH E:2087 , HOH E:2120 , HOH E:2121 , HOH E:2153 , HOH E:2215
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA E1325 THROUGH NAG E1327
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Chain A
Chain B
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Chain E
Chain F
Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (519 KB)
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Biol.Unit 1 (506 KB)
Header - Biol.Unit 1
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