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4CQL
Asym. Unit
Info
Asym.Unit (1.1 MB)
Biol.Unit 1 (283 KB)
Biol.Unit 2 (287 KB)
Biol.Unit 3 (289 KB)
Biol.Unit 4 (286 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HETEROTETRAMERIC HUMAN KETOACYL REDUCTASE COMPLEXED WITH NAD
Authors
:
R. Venkatesan, S. K. Sah-Teli, L. O. Awoniyi, G. Jiang, P. Prus, A. J. Kas J. K. Hiltunen, R. K. Wierenga, Z. Chen
Date
:
19 Feb 14 (Deposition) - 10 Sep 14 (Release) - 17 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: E,F,G,H (1x)
Biol. Unit 2: A,B,C,D (1x)
Biol. Unit 3: M,N,O,P (1x)
Biol. Unit 4: I,J,K,L (1x)
Keywords
:
Oxidoreductase, Kar, 3-Ketoacyl-Acp Reductase, Hsd8, 17-Beta Hydroxysteroid Dehydrogenase, Hsd17B8, 3R- Hydroxyacyl-Coa Dehydrogenase, Carbobyl Reductase Type4, Nadh, Nadp, Nadph, Hetero Tetramer,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Venkatesan, S. K. Sah-Teli, L. O. Awoniyi, G. Jiang, P. Prus, A. J. Kastaniotis, J. K. Hiltunen, R. K. Wierenga, Z. Chen
Insights Into Mitochondrial Fatty Acid Synthesis From The Structure Of Heterotetrameric 3-Ketoacyl-Acp Reductase/3R- Hydroxyacyl-Coa Dehydrogenase.
Nat. Commun. V. 5 4805 2014
[
close entry info
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
1c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
1d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
1e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
1f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
1g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
1h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAD
8
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:18 , SER A:21 , GLY A:22 , ILE A:23 , ASP A:42 , LEU A:43 , ALA A:74 , ASP A:75 , VAL A:76 , CYS A:103 , GLY A:105 , ILE A:106 , VAL A:126 , ILE A:154 , SER A:155 , SER A:156 , TYR A:169 , LYS A:173 , GLY A:200 , ILE A:202 , THR A:204 , MET A:206 , HOH A:2003
BINDING SITE FOR RESIDUE NAD A 301
2
AC2
SOFTWARE
GLY D:18 , SER D:21 , GLY D:22 , ILE D:23 , ASP D:42 , LEU D:43 , ALA D:74 , ASP D:75 , VAL D:76 , CYS D:103 , ALA D:104 , GLY D:105 , ILE D:106 , VAL D:126 , ILE D:154 , SER D:156 , TYR D:169 , LYS D:173 , PRO D:199 , GLY D:200 , ILE D:202 , THR D:204 , MET D:206 , THR D:207
BINDING SITE FOR RESIDUE NAD D 301
3
AC3
SOFTWARE
SER E:21 , GLY E:22 , ILE E:23 , ASP E:42 , LEU E:43 , ALA E:74 , ASP E:75 , VAL E:76 , CYS E:103 , GLY E:105 , ILE E:106 , VAL E:126 , ILE E:154 , SER E:155 , SER E:156 , TYR E:169 , LYS E:173 , PRO E:199 , GLY E:200 , ILE E:202 , THR E:204 , MET E:206 , THR E:207 , HOH E:2009 , HOH E:2024
BINDING SITE FOR RESIDUE NAD E 301
4
AC4
SOFTWARE
SER H:21 , GLY H:22 , ILE H:23 , ASP H:42 , LEU H:43 , ALA H:74 , ASP H:75 , VAL H:76 , CYS H:103 , GLY H:105 , ILE H:106 , VAL H:126 , ILE H:154 , SER H:156 , TYR H:169 , LYS H:173 , PRO H:199 , GLY H:200 , ILE H:202 , THR H:204
BINDING SITE FOR RESIDUE NAD H 301
5
AC5
SOFTWARE
SER I:21 , GLY I:22 , ILE I:23 , ASP I:42 , LEU I:43 , ALA I:74 , ASP I:75 , VAL I:76 , CYS I:103 , ALA I:104 , GLY I:105 , ILE I:106 , VAL I:126 , ILE I:154 , SER I:156 , TYR I:169 , LYS I:173 , PRO I:199 , GLY I:200 , ILE I:202 , THR I:204 , MET I:206 , THR I:207 , HOH I:2014
BINDING SITE FOR RESIDUE NAD I 301
6
AC6
SOFTWARE
SER L:21 , GLY L:22 , ILE L:23 , ASP L:42 , LEU L:43 , ASP L:44 , ALA L:74 , ASP L:75 , VAL L:76 , SER L:77 , CYS L:103 , ALA L:104 , GLY L:105 , VAL L:126 , ILE L:154 , SER L:155 , SER L:156 , TYR L:169 , LYS L:173 , PRO L:199 , GLY L:200 , THR L:204 , MET L:206
BINDING SITE FOR RESIDUE NAD L 301
7
AC7
SOFTWARE
SER M:21 , GLY M:22 , ILE M:23 , ASP M:42 , LEU M:43 , ALA M:74 , ASP M:75 , VAL M:76 , SER M:77 , CYS M:103 , ALA M:104 , GLY M:105 , ILE M:106 , VAL M:126 , ILE M:154 , SER M:155 , TYR M:169 , LYS M:173 , PRO M:199 , GLY M:200 , ILE M:202 , THR M:204 , PRO M:205 , MET M:206 , HOH M:2001
BINDING SITE FOR RESIDUE NAD M 301
8
AC8
SOFTWARE
SER P:21 , GLY P:22 , ILE P:23 , GLY P:24 , ASP P:42 , LEU P:43 , ALA P:74 , ASP P:75 , VAL P:76 , CYS P:103 , ALA P:104 , GLY P:105 , ILE P:106 , VAL P:126 , ILE P:154 , SER P:155 , SER P:156 , TYR P:169 , LYS P:173 , PRO P:199 , GLY P:200 , ILE P:202 , THR P:204 , PRO P:205
BINDING SITE FOR RESIDUE NAD P 301
[
close Site info
]
SAPs(SNPs)/Variants
(4, 32)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_039049 (L70M, chain B/C/F/G/J/K/N/O, )
2: VAR_035844 (V158L, chain A/D/E/H/I/L/M/P, )
3: VAR_DHB8_HUMAN_CCDS4769_1_01 (V158L, chain A/D/E/H/I/L/M/P, )
4: VAR_052316 (H190R, chain A/D/E/H/I/L/M/P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_039049
L
70
M
CBR4_HUMAN
Polymorphism
2877380
B/C/F/G/J/K/N/O
L
70
M
2
UniProt
VAR_035844
V
158
L
DHB8_HUMAN
Unclassified
---
A/D/E/H/I/L/M/P
V
158
L
3
CancerSNP
VAR_DHB8_HUMAN_CCDS4769_1_01
*
V
158
L
DHB8_HUMAN
Disease (Breast cancer)
---
A/D/E/H/I/L/M/P
V
158
L
4
UniProt
VAR_052316
H
190
R
DHB8_HUMAN
Polymorphism
34491699
A/D/E/H/I/L/M/P
H
190
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (B:135-163,C:135-163,F:135-163,G:13...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
CBR4_HUMAN
135-163
8
B:135-163
C:135-163
F:135-163
G:135-163
J:135-163
K:135-163
N:135-163
O:135-163
DHB8_HUMAN
156-184
8
A:156-184
D:156-184
E:156-184
H:156-184
I:156-184
L:156-184
M:156-184
P:156-184
[
close PROSITE info
]
Exons
(9, 72)
Info
All Exons
Exon 1.25a (A:5-18 | D:6-18 | E:6-18 | H:4-18 ...)
Exon 1.25c (A:18-90 (gaps) | D:18-90 (gaps) | ...)
Exon 1.26 (A:91-129 | D:91-129 | E:91-129 | H...)
Exon 1.27 (A:130-160 | D:130-160 | E:130-160 ...)
Exon 1.28 (A:161-189 | D:161-189 | E:161-189 ...)
Exon 1.29 (A:189-217 | D:189-217 | E:189-217 ...)
Exon 1.30 (A:218-232 | D:218-232 | E:218-232 ...)
Exon 1.31 (A:232-257 | D:232-257 | E:232-257 ...)
Exon 1.32 (A:257-261 | D:257-260 | E:257-261 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.25a
02: Boundary 1.25a/1.25c
03: Boundary 1.25c/1.26
04: Boundary 1.26/1.27
05: Boundary 1.27/1.28
06: Boundary 1.28/1.29
07: Boundary 1.29/1.30
08: Boundary 1.30/1.31
09: Boundary 1.31/1.32
10: Boundary 1.32/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.25a
ENST00000374662
25a
ENSE00001600727
chr6:
33172419-33172497
79
DHB8_HUMAN
1-18
18
8
A:5-18
D:6-18
E:6-18
H:4-18
I:4-18
L:5-18
M:5-18
P:5-18
14
13
13
15
15
14
14
14
1.25c
ENST00000374662
25c
ENSE00001793157
chr6:
33172679-33172896
218
DHB8_HUMAN
18-90
73
8
A:18-90 (gaps)
D:18-90 (gaps)
E:18-90 (gaps)
H:18-90 (gaps)
I:18-90 (gaps)
L:18-90 (gaps)
M:18-90 (gaps)
P:18-90 (gaps)
73
73
73
73
73
73
73
73
1.26
ENST00000374662
26
ENSE00001598392
chr6:
33172998-33173114
117
DHB8_HUMAN
91-129
39
8
A:91-129
D:91-129
E:91-129
H:91-129
I:91-129
L:91-129
M:91-129
P:91-129
39
39
39
39
39
39
39
39
1.27
ENST00000374662
27
ENSE00001601587
chr6:
33173224-33173316
93
DHB8_HUMAN
130-160
31
8
A:130-160
D:130-160
E:130-160
H:130-160
I:130-160
L:130-160
M:130-160
P:130-160
31
31
31
31
31
31
31
31
1.28
ENST00000374662
28
ENSE00001720519
chr6:
33173417-33173502
86
DHB8_HUMAN
161-189
29
8
A:161-189
D:161-189
E:161-189
H:161-189
I:161-189
L:161-189
M:161-189
P:161-189
29
29
29
29
29
29
29
29
1.29
ENST00000374662
29
ENSE00001648148
chr6:
33173605-33173689
85
DHB8_HUMAN
189-217
29
8
A:189-217
D:189-217
E:189-217
H:189-217 (gaps)
I:189-217
L:189-217 (gaps)
M:189-217
P:189-217 (gaps)
29
29
29
29
29
29
29
29
1.30
ENST00000374662
30
ENSE00001722016
chr6:
33173911-33173953
43
DHB8_HUMAN
218-232
15
8
A:218-232
D:218-232
E:218-232
H:218-232
I:218-232
L:218-232
M:218-232
P:218-232
15
15
15
15
15
15
15
15
1.31
ENST00000374662
31
ENSE00001748449
chr6:
33174152-33174226
75
DHB8_HUMAN
232-257
26
8
A:232-257
D:232-257
E:232-257
H:232-257
I:232-257
L:232-257
M:232-257
P:232-257
26
26
26
26
26
26
26
26
1.32
ENST00000374662
32
ENSE00001882553
chr6:
33174415-33174608
194
DHB8_HUMAN
257-261
5
8
A:257-261
D:257-260
E:257-261
H:257-261
I:257-261
L:257-261
M:257-261
P:257-261
5
4
5
5
5
5
5
5
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asym.Unit (1.1 MB)
Header - Asym.Unit
Biol.Unit 1 (283 KB)
Header - Biol.Unit 1
Biol.Unit 2 (287 KB)
Header - Biol.Unit 2
Biol.Unit 3 (289 KB)
Header - Biol.Unit 3
Biol.Unit 4 (286 KB)
Header - Biol.Unit 4
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