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4COK
Biol. Unit 1
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Asym.Unit (205 KB)
Biol.Unit 1 (393 KB)
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(1)
Title
:
FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF PYRUVATE DECARBOXYLASE FROM GLUCONOACETOBACTER DIAZOTROPHICUS
Authors
:
L. J. Vanzyl, W. -D. Schubert, M. Tuffin, D. A. Cowan
Date
:
29 Jan 14 (Deposition) - 01 Oct 14 (Release) - 08 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Van Zyl, W. Schubert, M. I. Tuffin, D. A. Cowan
Structure And Functional Characterization Of Pyruvate Decarboxylase From Gluconacetobacter Diazotrophicus.
Bmc Struct. Biol. V. 14 21 2014
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: THIAMINE DIPHOSPHATE (TPPa)
3b: THIAMINE DIPHOSPHATE (TPPb)
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No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
SO4
4
Ligand/Ion
SULFATE ION
3
TPP
4
Ligand/Ion
THIAMINE DIPHOSPHATE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:385 , ASP A:386 , GLY A:409 , HIS A:410 , ILE A:411 , GLY A:435 , ASP A:436 , GLY A:437 , SER A:438 , ASN A:463 , GLY A:465 , TYR A:466 , THR A:467 , ILE A:468 , GLU A:469 , MG A:601 , HOH A:2367 , HOH A:2479 , HOH A:2480 , HOH A:2515 , HOH A:2630 , ALA B:25 , GLY B:26 , GLU B:50 , VAL B:75 , HIS B:114
BINDING SITE FOR RESIDUE TPP A 600
2
AC2
SOFTWARE
ASP A:436 , ASN A:463 , GLY A:465 , TPP A:600 , HOH A:2515
BINDING SITE FOR RESIDUE MG A 601
3
AC3
SOFTWARE
ALA A:25 , GLY A:26 , GLU A:50 , VAL A:75 , HIS A:114 , HOH A:2147 , GLY B:385 , ASP B:386 , GLY B:409 , HIS B:410 , ILE B:411 , GLY B:435 , ASP B:436 , GLY B:437 , SER B:438 , ASN B:463 , GLY B:465 , TYR B:466 , THR B:467 , ILE B:468 , GLU B:469 , MG B:601 , HOH B:2406 , HOH B:2407 , HOH B:2437 , HOH B:2535
BINDING SITE FOR RESIDUE TPP B 600
4
AC4
SOFTWARE
ASP B:436 , ASN B:463 , GLY B:465 , TPP B:600 , HOH B:2437
BINDING SITE FOR RESIDUE MG B 601
5
AC5
SOFTWARE
LEU A:373 , GLN A:429 , ARG A:518 , HOH A:2469 , HOH A:2597 , HOH A:2631
BINDING SITE FOR RESIDUE SO4 A1556
6
AC6
SOFTWARE
ARG A:377 , GLN A:429 , HIS B:398
BINDING SITE FOR RESIDUE SO4 A1557
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SAPs(SNPs)/Variants
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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