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4COD
Biol. Unit 1
Info
Asym.Unit (367 KB)
Biol.Unit 1 (359 KB)
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(1)
Title
:
ENCODED LIBRARY TECHNOLOGY AS A SOURCE OF HITS FOR THE DISCOVERY AND LEAD OPTIMIZATION OF A POTENT AND SELECTIVE CLASS OF BACTERICIDAL DIRECT INHIBITORS OF MYCOBACTERIUM TUBERCULOSIS INHA
Authors
:
L. Encinas, H. Okeefe, M. Neu, M. A. Convery, W. Mcdowell, A. Mendoza-Lo L. B. Pages, J. Castro-Pichel, G. Evindar
Date
:
28 Jan 14 (Deposition) - 12 Feb 14 (Release) - 11 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : B,D,F,H
Biol. Unit 1: B,D,F,H (1x)
Keywords
:
Transferase, Elt, Encoded Library Technology, Isoniazid, L-Proline
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Encinas, H. O'Keefe, M. Neu, M. J. Remuinan, A. M. Patel, A. Guardia, C. P. Davie, N. Perez-Macias, H. Yang, M. A. Convery, J. A. Messer, E. Perez-Herran, P. A. Centrella, D. Alvarez-Gomez, M. A. Clark, S. Huss, G. K. O'Donovan, F. Ortega-Muro, W. Mcdowell, P. Castaneda, C. C. Arico-Muendel, S. Pajk, J. Rullas, I. Angulo-Barturen, E. Alvarez-Ruiz, A. Mendoza-Losana, L. B. Pages, J. Castro-Pichel, G. Evindar
Encoded Library Technology As A Source Of Hits For The Discovery And Lead Optimization Of A Potent And Selective Class Of Bactericidal Direct Inhibitors Of Mycobacterium Tuberculosis Inha.
J. Med. Chem. V. 57 1276 2014
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: N-((3R,5S)-1-(BENZOFURAN-3-CARBONY... (KV1a)
1b: N-((3R,5S)-1-(BENZOFURAN-3-CARBONY... (KV1b)
1c: N-((3R,5S)-1-(BENZOFURAN-3-CARBONY... (KV1c)
1d: N-((3R,5S)-1-(BENZOFURAN-3-CARBONY... (KV1d)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
KV1
4
Ligand/Ion
N-((3R,5S)-1-(BENZOFURAN-3-CARBONYL)-5-(ETHYLCARBAMOYL)PYRROLIDIN-3-YL)-3-ETHYL-1-METHYL-1H-PYRAZOLE-5-CARBOXAMIDE
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY B:96 , PHE B:97 , MET B:98 , MET B:103 , GLY B:104 , PHE B:149 , ALA B:157 , TYR B:158 , MET B:161 , LEU B:197 , ALA B:198 , MET B:199 , SER B:200 , ALA B:201 , ILE B:202 , NAD B:1271
BINDING SITE FOR RESIDUE KV1 B1270
2
AC2
SOFTWARE
GLY B:14 , ILE B:15 , ILE B:16 , SER B:20 , ILE B:21 , PHE B:41 , LEU B:63 , ASP B:64 , VAL B:65 , SER B:94 , ILE B:95 , GLY B:96 , ILE B:122 , MET B:147 , ASP B:148 , PHE B:149 , LYS B:165 , ALA B:191 , GLY B:192 , PRO B:193 , ILE B:194 , THR B:196 , ALA B:198 , KV1 B:1270 , HOH B:2006 , HOH B:2007 , HOH B:2008 , HOH B:2061 , HOH B:2095 , HOH B:2142 , HOH B:2143
BINDING SITE FOR RESIDUE NAD B1271
3
AC3
SOFTWARE
GLY D:96 , PHE D:97 , MET D:98 , MET D:103 , GLY D:104 , TYR D:158 , MET D:161 , LEU D:197 , ALA D:198 , MET D:199 , SER D:200 , ALA D:201 , ILE D:202 , NAD D:1271
BINDING SITE FOR RESIDUE KV1 D1270
4
AC4
SOFTWARE
GLY D:14 , ILE D:16 , SER D:20 , ILE D:21 , PHE D:41 , LEU D:63 , ASP D:64 , VAL D:65 , SER D:94 , ILE D:95 , GLY D:96 , ILE D:122 , MET D:147 , ASP D:148 , PHE D:149 , LYS D:165 , GLY D:192 , PRO D:193 , ILE D:194 , THR D:196 , ALA D:198 , KV1 D:1270 , HOH D:2004 , HOH D:2055 , HOH D:2115
BINDING SITE FOR RESIDUE NAD D1271
5
AC5
SOFTWARE
GLY F:14 , ILE F:16 , SER F:20 , ILE F:21 , PHE F:41 , LEU F:63 , ASP F:64 , VAL F:65 , SER F:94 , ILE F:95 , GLY F:96 , ILE F:122 , MET F:147 , ASP F:148 , PHE F:149 , LYS F:165 , PRO F:193 , ILE F:194 , THR F:196 , ALA F:198 , MET F:199 , KV1 F:1271 , HOH F:2002 , HOH F:2003 , HOH F:2005 , HOH F:2036 , HOH F:2037 , HOH F:2075
BINDING SITE FOR RESIDUE NAD F1270
6
AC6
SOFTWARE
GLY F:96 , PHE F:97 , MET F:98 , MET F:103 , GLY F:104 , PHE F:149 , ALA F:157 , TYR F:158 , MET F:161 , LEU F:197 , ALA F:198 , MET F:199 , SER F:200 , ALA F:201 , ILE F:202 , LEU F:207 , NAD F:1270
BINDING SITE FOR RESIDUE KV1 F1271
7
AC7
SOFTWARE
GLY H:96 , PHE H:97 , MET H:98 , MET H:103 , GLY H:104 , ALA H:157 , TYR H:158 , MET H:161 , LEU H:197 , ALA H:198 , MET H:199 , SER H:200 , ALA H:201 , ILE H:202 , LEU H:207 , NAD H:1271
BINDING SITE FOR RESIDUE KV1 H1270
8
AC8
SOFTWARE
GLY H:14 , ILE H:15 , ILE H:16 , SER H:20 , ILE H:21 , PHE H:41 , LEU H:63 , ASP H:64 , VAL H:65 , SER H:94 , ILE H:95 , GLY H:96 , ILE H:122 , MET H:147 , ASP H:148 , PHE H:149 , LYS H:165 , GLY H:192 , PRO H:193 , ILE H:194 , THR H:196 , ALA H:198 , MET H:199 , KV1 H:1270 , HOH H:2004 , HOH H:2005 , HOH H:2020 , HOH H:2047
BINDING SITE FOR RESIDUE NAD H1271
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_INHA_MYCTU_001 (S94A, chain B/D/F/H, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_INHA_MYCTU_001
*
S
94
A
INHA_MYCTU
---
---
B/D/F/H
S
94
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Sorry, no Info available
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4codb_ (B:)
1b: SCOP_d4codd_ (D:)
1c: SCOP_d4codf_ (F:)
1d: SCOP_d4codh_ (H:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Enoyl-ACP reductase
(96)
Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
(44)
1a
d4codb_
B:
1b
d4codd_
D:
1c
d4codf_
F:
1d
d4codh_
H:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Chain H
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (367 KB)
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Header - Biol.Unit 1
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