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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
4CNI
Asym. Unit
Info
Asym.Unit (229 KB)
Biol.Unit 1 (115 KB)
Biol.Unit 2 (114 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FAB PORTION OF OLOKIZUMAB IN COMPLEX WITH IL-6
Authors
:
S. Shaw, T. Bourne, C. Meier, B. Carrington, R. Gelinas, A. Henry, A. Pop R. Adams, T. Baker, S. Rapecki, D. Marshall, H. Neale, A. Lawson
Date
:
22 Jan 14 (Deposition) - 30 Apr 14 (Release) - 30 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,H,L
Biol. Unit 1: A,B,D (1x)
Biol. Unit 2: C,H,L (1x)
Keywords
:
Immune System, Cdp6038, Interleukin 6
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Shaw, T. Bourne, C. Meier, B. Carrington, R. Gelinas, A. Henry, A. Popplewell, R. Adams, T. Baker, S. Rapecki, D. Marshall, A. Moore, H. Neale, A. Lawson
Discovery And Characterization Of Olokizumab: A Humanized Antibody Targeting Interleukin-6 And Neutralizing Gp130- Signaling.
Mabs V. 6 773 2014
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
2a: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMa)
2b: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
5
Ligand/Ion
SULFATE ION
2
TAM
2
Ligand/Ion
TRIS(HYDROXYETHYL)AMINOMETHANE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:32 , ARG A:100 , GLU A:101 , SER A:102 , TYR A:103 , SER A:108 , HOH A:2069 , HOH A:2351 , HOH A:2353
BINDING SITE FOR RESIDUE TAM A1221
2
AC2
SOFTWARE
SER B:60 , HOH B:2104 , ARG C:40 , HIS C:164 , ARG C:168 , HOH C:2194
BINDING SITE FOR RESIDUE SO4 C1185
3
AC3
SOFTWARE
SER A:122 , HOH A:2214 , PRO C:18 , LEU C:19 , ARG C:24 , HOH C:2010 , HOH C:2029
BINDING SITE FOR RESIDUE SO4 C1186
4
AC4
SOFTWARE
ARG D:40 , HIS D:164 , HOH D:2180 , HOH D:2191 , HOH D:2192 , SER L:60
BINDING SITE FOR RESIDUE SO4 D1185
5
AC5
SOFTWARE
PRO D:18 , LEU D:19 , HOH D:2011 , HOH D:2026 , SER H:122
BINDING SITE FOR RESIDUE SO4 D1186
6
AC6
SOFTWARE
TYR H:32 , ARG H:100 , GLU H:101 , SER H:102 , TYR H:103 , TYR H:104 , SER H:108 , HOH H:2312
BINDING SITE FOR RESIDUE TAM H1220
7
AC7
SOFTWARE
GLU A:140 , SER A:141 , HOH A:2247 , HOH A:2250 , GLU H:140 , SER H:141 , HOH H:2314
BINDING SITE FOR RESIDUE SO4 H1221
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_029266 (D134E, chain C/D, )
2: VAR_013076 (D134V, chain C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029266
D
162
E
IL6_HUMAN
Polymorphism
13306435
C/D
D
134
E
2
UniProt
VAR_013076
D
162
V
IL6_HUMAN
Polymorphism
2069860
C/D
D
134
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: INTERLEUKIN_6 (C:73-98,D:73-98)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTERLEUKIN_6
PS00254
Interleukin-6 / G-CSF / MGF signature.
IL6_HUMAN
101-126
2
C:73-98
D:73-98
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Exons
(4, 8)
Info
All Exons
Exon 1.2h (C:14-42 | D:14-42)
Exon 1.3b (C:43-80 | D:43-80)
Exon 1.4b (C:81-129 | D:81-129)
Exon 1.5c (C:130-184 | D:130-184)
View:
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All Exon Boundaries
1: Boundary 1.2a/1.2h
2: Boundary 1.2h/1.3b
3: Boundary 1.3b/1.4b
4: Boundary 1.4b/1.5c
5: Boundary 1.5c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000258743
2a
ENSE00002176699
chr7:
22766766-22766900
135
IL6_HUMAN
1-7
7
0
-
-
1.2h
ENST00000258743
2h
ENSE00001751437
chr7:
22767063-22767253
191
IL6_HUMAN
7-70
64
2
C:14-42
D:14-42
29
29
1.3b
ENST00000258743
3b
ENSE00001647265
chr7:
22768312-22768425
114
IL6_HUMAN
71-108
38
2
C:43-80
D:43-80
38
38
1.4b
ENST00000258743
4b
ENSE00000673800
chr7:
22769133-22769279
147
IL6_HUMAN
109-157
49
2
C:81-129
D:81-129
49
49
1.5c
ENST00000258743
5c
ENSE00001128385
chr7:
22771025-22771607
583
IL6_HUMAN
158-212
55
2
C:130-184
D:130-184
55
55
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (229 KB)
Header - Asym.Unit
Biol.Unit 1 (115 KB)
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Biol.Unit 2 (114 KB)
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