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4CNC
Asym. Unit
Info
Asym.Unit (194 KB)
Biol.Unit 1 (96 KB)
Biol.Unit 2 (94 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN 5T4 (WNT-ACTIVATED INHIBITORY FACTOR 1, TROPHOBLAST GLYCOPROTEIN)
Authors
:
Y. Zhao, T. Malinauskas, K. Harlos, E. Y. Jones
Date
:
21 Jan 14 (Deposition) - 26 Feb 14 (Release) - 23 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.77
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cell Adhesion, Waif1, Tpbg, Trovax, Cancer, Signaling, Leucine-Rich Repeats, Wnt/Beta-Catenin Signaling Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhao, T. Malinauskas, K. Harlos, E. Y. Jones
Structural Insights Into The Inhibition Of Wnt Signaling By Cancer Antigen 5T4/Wnt-Activated Inhibitory Factor 1.
Structure V. 22 612 2014
[
close entry info
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Hetero Components
(5, 32)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2a: SODIUM ION (NAa)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
NA
1
Ligand/Ion
SODIUM ION
3
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
SO4
14
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN B:61 , CYS B:62 , CYS B:68
BINDING SITE FOR RESIDUE PEG B1349
02
AC2
SOFTWARE
PHE B:138 , HIS B:140 , LEU B:141
BINDING SITE FOR RESIDUE PEG B1350
03
AC3
SOFTWARE
ALA A:303 , THR A:307 , LYS A:310 , SER A:339 , LEU A:342 , HOH A:2102
BINDING SITE FOR RESIDUE PEG A1351
04
AC4
SOFTWARE
ALA B:121 , ARG B:145 , GLU B:177 , SO4 B:1358
BINDING SITE FOR RESIDUE PEG B1351
05
AC5
SOFTWARE
SER A:126 , ASP A:148 , SER A:150 , HIS A:151 , ASN A:181 , NAG A:1346
BINDING SITE FOR RESIDUE GOL A1352
06
AC6
SOFTWARE
ASP B:148 , SER B:150 , ASN B:181 , NAG B:1345 , NAG B:1346
BINDING SITE FOR RESIDUE GOL B1352
07
AC7
SOFTWARE
ASP B:60 , GLN B:61
BINDING SITE FOR RESIDUE GOL B1353
08
AC8
SOFTWARE
ARG A:214 , HIS A:238 , SER A:262 , HIS A:264 , ARG A:288
BINDING SITE FOR RESIDUE SO4 A1353
09
AC9
SOFTWARE
ARG A:213 , HIS A:238 , GLU A:261 , HOH A:2105
BINDING SITE FOR RESIDUE SO4 A1354
10
BC1
SOFTWARE
PRO A:186 , GLU A:187
BINDING SITE FOR RESIDUE SO4 A1355
11
BC2
SOFTWARE
SER A:69 , GLU A:70 , ALA A:71 , HOH A:2006
BINDING SITE FOR RESIDUE SO4 A1356
12
BC3
SOFTWARE
PRO A:107 , ALA A:108 , ARG A:134
BINDING SITE FOR RESIDUE SO4 A1357
13
BC4
SOFTWARE
SER B:69 , GLU B:70 , ALA B:71
BINDING SITE FOR RESIDUE SO4 B1354
14
BC5
SOFTWARE
ARG B:214 , HIS B:238 , SER B:262 , HIS B:264 , ARG B:288
BINDING SITE FOR RESIDUE SO4 B1355
15
BC6
SOFTWARE
PRO B:107 , ALA B:108 , ARG B:134 , ARG B:320 , HOH B:2019
BINDING SITE FOR RESIDUE SO4 B1356
16
BC7
SOFTWARE
SER B:253 , PHE B:254 , ARG B:255
BINDING SITE FOR RESIDUE SO4 B1357
17
BC8
SOFTWARE
SER A:194 , PHE A:195 , GLU A:196 , HOH A:2050 , HOH A:2061
BINDING SITE FOR RESIDUE SO4 A1358
18
BC9
SOFTWARE
THR A:312 , LYS A:318 , HOH A:2095
BINDING SITE FOR RESIDUE SO4 A1359
19
CC1
SOFTWARE
ARG B:213 , ARG B:214 , HIS B:238 , PEG B:1351
BINDING SITE FOR RESIDUE SO4 B1358
20
CC2
SOFTWARE
ASN A:79 , ARG B:213 , ARG B:237 , GLU B:261
BINDING SITE FOR RESIDUE SO4 A1360
21
CC3
SOFTWARE
HIS B:301 , HOH B:2062
BINDING SITE FOR RESIDUE SO4 B1359
22
CC4
SOFTWARE
THR B:307 , LYS B:310 , HOH B:2063 , HOH B:2064 , HOH B:2074
BINDING SITE FOR RESIDUE NA B1360
23
CC5
SOFTWARE
ASN A:79 , ASN A:81 , HIS B:238 , GLU B:261 , ARG B:288
BINDING SITE FOR MONO-SACCHARIDE NAG A1345 BOUND TO ASN A 81
24
CC6
SOFTWARE
PHE A:97 , THR A:99 , ASN A:124 , GLN A:146 , ASP A:148 , GOL A:1352 , HOH A:2038
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1346 THROUGH NAG A1347 BOUND TO ASN A 124
25
CC7
SOFTWARE
SER A:219 , HIS A:221 , ASN A:243
BINDING SITE FOR MONO-SACCHARIDE NAG A1348 BOUND TO ASN A 243
26
CC8
SOFTWARE
ARG A:255 , ASN A:256 , HOH A:2104
BINDING SITE FOR MONO-SACCHARIDE NAG A1349 BOUND TO ASN A 256
27
CC9
SOFTWARE
HIS A:238 , GLU A:261 , HIS A:286 , ARG A:288 , HOH A:2074 , HOH A:2083 , ASN B:79 , ASN B:81 , GLN B:102
BINDING SITE FOR MONO-SACCHARIDE NAG A1350 BOUND TO ASN B 81
28
DC1
SOFTWARE
PHE B:97 , THR B:99 , ASN B:124 , GLN B:146 , ASP B:148 , GOL B:1352
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1345 THROUGH NAG B1346 BOUND TO ASN B 124
29
DC2
SOFTWARE
HIS B:182 , SER B:219 , HIS B:221 , ASN B:243 , HOH B:2043
BINDING SITE FOR MONO-SACCHARIDE NAG B1347 BOUND TO ASN B 243
30
DC3
SOFTWARE
LEU B:230 , ALA B:231 , SER B:253 , ARG B:255 , ASN B:256
BINDING SITE FOR MONO-SACCHARIDE NAG B1348 BOUND TO ASN B 256
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 10)
Info
All PROSITE Patterns/Profiles
1: LRR (A:92-113,B:92-113|A:143-163,B:143-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
TPBG_HUMAN
92-113
143-164
235-256
211-232
259-280
10
A:92-113
B:92-113
A:143-163
B:143-164
A:235-256
B:235-256
A:211-232
B:211-232
A:259-280
B:259-280
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4cnca_ (A:)
1b: SCOP_d4cncb_ (B:)
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Classes
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(
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d4cnca_
A:
1b
d4cncb_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Asymmetric Unit 1
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