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Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (51 KB)
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(1)
Title
:
X-RAY ANALYSES OF ASPARTIC PROTEINASES IV. STRUCTURE AND REFINEMENT AT 2.2 ANGSTROMS RESOLUTION OF BOVINE CHYMOSIN
Authors
:
M. Newman, C. Frazao, G. Khan, I. J. Tickle, T. L. Blundell, M. Safro, N. Andreeva, A. Zdanov
Date
:
01 Nov 91 (Deposition) - 07 Nov 91 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase (Acid Proteinase)
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Newman, M. Safro, C. Frazao, G. Khan, A. Zdanov, I. J. Tickle, T. L. Blundell, N. Andreeva
X-Ray Analyses Of Aspartic Proteinases. Iv. Structure And Refinement At 2. 2 A Resolution Of Bovine Chymosin.
J. Mol. Biol. V. 221 1295 1991
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(2, 2)
Info
All Sites
1: AC1 (AUTHOR)
2: AC2 (AUTHOR)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
AUTHOR
ASP A:32
ACTIVE SITE
2
AC2
AUTHOR
ASP A:215
ACTIVE SITE
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CHYM_BOVIN_001 (G243D, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CHYM_BOVIN_001
*
G
302
D
CHYM_BOVIN
---
---
A
G
243
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_A1 (A:14-323)
2: ASP_PROTEASE (A:29-40|A:212-223)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_A1
PS51767
Peptidase family A1 domain profile.
CHYM_BOVIN
74-378
1
A:14-323
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
CHYM_BOVIN
89-100
271-282
2
A:29-40
A:212-223
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Exons
(8, 8)
Info
All Exons
Exon 1.2 (A:-2-11)
Exon 1.3 (A:12-51)
Exon 1.4 (A:51-90)
Exon 1.5 (A:91-157)
Exon 1.6 (A:157-196 (gaps))
Exon 1.7 (A:196-244)
Exon 1.8 (A:245-277)
Exon 1.9 (A:278-326 (gaps))
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
9: Boundary 1.9/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000013970
1
ENSBTAE00000266971
chr3:
35631399-35631313
87
CHYM_BOVIN
1-21
21
0
-
-
1.2
ENSBTAT00000013970
2
ENSBTAE00000266969
chr3:
35628381-35628231
151
CHYM_BOVIN
21-71
51
1
A:-2-11
13
1.3
ENSBTAT00000013970
3
ENSBTAE00000114008
chr3:
35627470-35627353
118
CHYM_BOVIN
72-111
40
1
A:12-51
40
1.4
ENSBTAT00000013970
4
ENSBTAE00000114011
chr3:
35626285-35626167
119
CHYM_BOVIN
111-150
40
1
A:51-90
40
1.5
ENSBTAT00000013970
5
ENSBTAE00000266967
chr3:
35624649-35624450
200
CHYM_BOVIN
151-217
67
1
A:91-157
67
1.6
ENSBTAT00000013970
6
ENSBTAE00000114017
chr3:
35623869-35623756
114
CHYM_BOVIN
217-255
39
1
A:157-196 (gaps)
40
1.7
ENSBTAT00000013970
7
ENSBTAE00000114020
chr3:
35622433-35622289
145
CHYM_BOVIN
255-303
49
1
A:196-244
49
1.8
ENSBTAT00000013970
8
ENSBTAE00000114021
chr3:
35621673-35621575
99
CHYM_BOVIN
304-336
33
1
A:245-277
33
1.9
ENSBTAT00000013970
9
ENSBTAE00000266965
chr3:
35620863-35620595
269
CHYM_BOVIN
337-381
45
1
A:278-326 (gaps)
49
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4cmsa_ (A:)
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(
)
(
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Folds
(
)
(
)
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(
)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Pepsin-like
(505)
Protein domain
:
Chymosin (synonym: renin)
(67)
Cow (Bos taurus) [TaxId: 9913]
(6)
1a
d4cmsa_
A:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_4cmsA02 (A:171-325)
1b: CATH_4cmsA01 (A:1-170)
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Organisms
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)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cathepsin D, subunit A; domain 1
(745)
Homologous Superfamily
:
Acid Proteases
(745)
Cattle (Bos taurus)
(4)
1a
4cmsA02
A:171-325
1b
4cmsA01
A:1-170
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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