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4CH2
Biol. Unit 2
Info
Asym.Unit (216 KB)
Biol.Unit 1 (104 KB)
Biol.Unit 2 (105 KB)
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Title
:
LOW-SALT CRYSTAL STRUCTURE OF A THROMBIN-GPIBALPHA PEPTIDE COMPLEX
Authors
:
B. C. Lechtenberg, S. M. V. Freund, J. A. Huntington
Date
:
28 Nov 13 (Deposition) - 11 Dec 13 (Release) - 12 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,P,Q
Biol. Unit 1: A,B,P (1x)
Biol. Unit 2: C,D,Q (1x)
Keywords
:
Hydrolase-Peptide Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. C. Lechtenberg, S. M. V. Freund, J. A. Huntington
Gpibalpha Interacts Exclusively With Exosite Ii Of Thrombin
J. Mol. Biol. V. 426 881 2014
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMIN... (0G6a)
1b: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMIN... (0G6b)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: O-PHOSPHOTYROSINE (PTRa)
4b: O-PHOSPHOTYROSINE (PTRb)
4c: O-PHOSPHOTYROSINE (PTRc)
4d: O-PHOSPHOTYROSINE (PTRd)
4e: O-PHOSPHOTYROSINE (PTRe)
4f: O-PHOSPHOTYROSINE (PTRf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0G6
1
Ligand/Ion
D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE
2
GOL
2
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
4
PTR
3
Mod. Amino Acid
O-PHOSPHOTYROSINE
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Sites
(4, 4)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ARG D:553 , LYS D:556 , HOH D:2142 , HOH D:2144 , HOH D:2150 , HOH D:2167
BINDING SITE FOR RESIDUE NA D3001
2
AC4
SOFTWARE
ILE D:329 , GLY D:330 , MET D:331 , SER D:332 , PRO D:333 , LYS D:385 , HIS D:386 , HOH D:2016 , HOH D:2045 , HOH D:2095
BINDING SITE FOR RESIDUE GOL D1579
3
AC5
SOFTWARE
VAL D:488 , ARG D:490 , CYS D:493 , PHE D:506 , CYS D:507 , HOH D:2121 , HOH D:2174
BINDING SITE FOR RESIDUE GOL D1580
4
AC8
SOFTWARE
HIS D:363 , TYR D:367 , LEU D:416 , ILE D:499 , ASP D:519 , ALA D:520 , GLY D:523 , SER D:525 , SER D:546 , TRP D:547 , GLY D:548 , GLY D:550 , GLY D:558 , HOH D:2022 , HOH D:2153 , HOH D:2155 , HOH D:2156 , HOH D:2162 , HOH D:4001 , HOH D:4002
BINDING SITE FOR LIGAND 0G6 D1001 BOUND TO SER D 525
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SAPs(SNPs)/Variants
(8, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_006714 (M337T, chain D, )
2: VAR_011782 (P343T, chain D, )
3: VAR_006715 (R382C, chain D, )
4: VAR_006716 (R388H, chain D, )
5: VAR_006717 (R418W, chain D, )
6: VAR_006718 (E466A, chain D, )
7: VAR_068913 (E489Q, chain D, )
8: VAR_006719 (G558V, chain D, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_006714
M
380
T
THRB_HUMAN
Disease (FA2D)
---
D
M
337
T
2
UniProt
VAR_011782
P
386
T
THRB_HUMAN
Polymorphism
5897
D
P
343
T
3
UniProt
VAR_006715
R
425
C
THRB_HUMAN
Disease (FA2D)
---
D
R
382
C
4
UniProt
VAR_006716
R
431
H
THRB_HUMAN
Disease (FA2D)
---
D
R
388
H
5
UniProt
VAR_006717
R
461
W
THRB_HUMAN
Disease (FA2D)
---
D
R
418
W
6
UniProt
VAR_006718
E
509
A
THRB_HUMAN
Disease (FA2D)
---
D
E
466
A
7
UniProt
VAR_068913
E
532
Q
THRB_HUMAN
Polymorphism
---
D
E
489
Q
8
UniProt
VAR_006719
G
601
V
THRB_HUMAN
Disease (FA2D)
---
D
G
558
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (D:321-575)
2: TRYPSIN_HIS (D:359-364)
3: TRYPSIN_SER (D:519-530)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
THRB_HUMAN
364-618
1
-
D:321-575
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
THRB_HUMAN
402-407
1
-
D:359-364
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
THRB_HUMAN
562-573
1
-
D:519-530
[
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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Pfam Domains
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Chain Q
Asymmetric Unit 1
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Asym.Unit (216 KB)
Header - Asym.Unit
Biol.Unit 1 (104 KB)
Header - Biol.Unit 1
Biol.Unit 2 (105 KB)
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