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4CFH
Asym. Unit
Info
Asym.Unit (286 KB)
Biol.Unit 1 (279 KB)
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(1)
Title
:
STRUCTURE OF AN ACTIVE FORM OF MAMMALIAN AMPK
Authors
:
B. Xiao, M. J. Sanders, E. Underwood, R. Heath, F. Mayer, D. Carmena, C. J P. A. Walker, J. F. Eccleston, L. F. Haire, P. Saiu, S. A. Howell, R. Aasl S. R. Martin, D. Carling, S. J. Gamblin
Date
:
18 Nov 13 (Deposition) - 25 Dec 13 (Release) - 08 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.24
Chains
:
Asym. Unit : A,B,C,E
Biol. Unit 1: A,B,C,E (1x)
Keywords
:
Transferase, Transferase Phosphorylation, Active Form, Nucleotide- Binding, Staurosporine-Binding, Serine/Threonine-Protein Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Xiao, M. J. Sanders, E. Underwood, R. Heath, F. Mayer, D. Carmena, C. Jing, P. A. Walker, J. F. Eccleston, L. F. Haire, P. Saiu, S. A. Howell R. Aasland, S. R. Martin, D. Carling, S. J. Gamblin
Structure Of Mammalian Ampk And Its Regulation By Adp
Nature V. 472 230 2011
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 4)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
2a: STAUROSPORINE (STUa)
3a: PHOSPHOTHREONINE (TPOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
2
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
STU
1
Ligand/Ion
STAUROSPORINE
3
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
[
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]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG E:69 , LYS E:169 , ILE E:239 , SER E:241 , PHE E:243 , ASP E:244 , ARG E:268 , VAL E:275 , LEU E:276 , VAL E:296 , HIS E:297 , ARG E:298
BINDING SITE FOR RESIDUE AMP E1325
2
AC2
SOFTWARE
HIS E:150 , THR E:199 , ILE E:203 , ALA E:204 , VAL E:224 , SER E:225 , ALA E:226 , HIS E:297 , ILE E:311 , SER E:313 , SER E:315 , ASP E:316
BINDING SITE FOR RESIDUE AMP E1326
3
AC3
SOFTWARE
LEU A:22 , GLY A:23 , VAL A:24 , GLY A:25 , ALA A:43 , LYS A:45 , MET A:93 , GLU A:94 , TYR A:95 , VAL A:96 , GLY A:99 , GLU A:100 , GLU A:143 , ASN A:144 , LEU A:146 , ASP A:157
BINDING SITE FOR RESIDUE STU A1550
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:22-45)
2: CBS (E:42-102|E:124-186|E:197-259|E:271...)
3: PROTEIN_KINASE_ST (A:135-147)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
AAPK1_RAT
33-56
1
A:22-45
2
CBS
PS51371
CBS domain profile.
AAKG1_RAT
42-102
124-186
197-259
271-328
4
E:42-102
E:124-186
E:197-259
E:271-324
3
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
AAPK1_RAT
146-158
1
A:135-147
[
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]
Exons
(12, 13)
Info
All Exons
Exon 1.1 (A:10-32 | -)
Exon 1.2 (A:32-79 | -)
Exon 1.3 (A:79-110 | -)
Exon 1.4 (A:111-159 | -)
Exon 1.5 (A:159-188 | -)
Exon 1.6 (A:188-263 | -)
Exon 1.7 (A:263-425 (gaps) | -)
Exon 1.8 (A:426-468 | -)
Exon 1.9 (A:468-470 | C:528-548)
Exon 2.6b (B:203-224)
Exon 2.7 (B:225-247)
Exon 2.9d (B:248-271)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/-
11: Boundary 2.5/2.6b
12: Boundary 2.6b/2.7
13: Boundary 2.7/2.9d
14: Boundary 2.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000017626
1
ENSRNOE00000121765
chr2:
54327788-54327914
127
AAPK1_RAT
1-43
43
1
A:10-32
-
23
-
1.2
ENSRNOT00000017626
2
ENSRNOE00000121918
chr2:
54343613-54343754
142
AAPK1_RAT
43-90
48
1
A:32-79
-
48
-
1.3
ENSRNOT00000017626
3
ENSRNOE00000122106
chr2:
54345598-54345691
94
AAPK1_RAT
90-121
32
1
A:79-110
-
32
-
1.4
ENSRNOT00000017626
4
ENSRNOE00000122282
chr2:
54349571-54349715
145
AAPK1_RAT
122-170
49
1
A:111-159
-
49
-
1.5
ENSRNOT00000017626
5
ENSRNOE00000122519
chr2:
54350756-54350843
88
AAPK1_RAT
170-199
30
1
A:159-188
-
30
-
1.6
ENSRNOT00000017626
6
ENSRNOE00000122797
chr2:
54354710-54354934
225
AAPK1_RAT
199-274
76
1
A:188-263
-
76
-
1.7
ENSRNOT00000017626
7
ENSRNOE00000122996
chr2:
54358193-54358679
487
AAPK1_RAT
274-436
163
1
A:263-425 (gaps)
-
163
-
1.8
ENSRNOT00000017626
8
ENSRNOE00000123286
chr2:
54358783-54358909
127
AAPK1_RAT
437-479
43
1
A:426-468
-
43
-
1.9
ENSRNOT00000017626
9
ENSRNOE00000224993
chr2:
54360218-54360462
245
AAPK1_RAT
479-559
81
2
A:468-470
C:528-548
3
21
2.1b
ENST00000254101
1b
ENSE00001858470
chr1:
146644123-146644008
116
AAKB2_HUMAN
-
0
0
-
-
2.2
ENST00000254101
2
ENSE00002156607
chr1:
146643746-146643568
179
AAKB2_HUMAN
1-52
52
0
-
-
2.3
ENST00000254101
3
ENSE00000903087
chr1:
146639512-146639346
167
AAKB2_HUMAN
53-108
56
0
-
-
2.4
ENST00000254101
4
ENSE00000903088
chr1:
146638518-146638425
94
AAKB2_HUMAN
108-139
32
0
-
-
2.5
ENST00000254101
5
ENSE00000903089
chr1:
146638197-146638077
121
AAKB2_HUMAN
140-180
41
0
-
-
2.6b
ENST00000254101
6b
ENSE00001706527
chr1:
146634152-146634019
134
AAKB2_HUMAN
180-224
45
1
B:203-224
22
2.7
ENST00000254101
7
ENSE00001647737
chr1:
146633359-146633291
69
AAKB2_HUMAN
225-247
23
1
B:225-247
23
2.9d
ENST00000254101
9d
ENSE00001949097
chr1:
146631221-146626685
4537
AAKB2_HUMAN
248-272
25
1
B:248-271
24
[
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SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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