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4CFF
Asym. Unit
Info
Asym.Unit (644 KB)
Biol.Unit 1 (316 KB)
Biol.Unit 2 (318 KB)
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(1)
Title
:
STRUCTURE OF FULL LENGTH HUMAN AMPK IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR, A THIENOPYRIDONE DERIVATIVE (A-769662)
Authors
:
B. Xiao, M. J. Sanders, D. Carmena, N. J. Bright, L. F. Haire, E. Underwoo B. R. Patel, R. B. Heath, P. A. Walker, S. Hallen, F. Giordanetto, S. R. M D. Carling, S. J. Gamblin
Date
:
14 Nov 13 (Deposition) - 25 Dec 13 (Release) - 12 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.92
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: C,D,F (1x)
Biol. Unit 2: A,B,E (1x)
Keywords
:
Transferase, Nucleotide-Binding, Staurosporine-Binding, Serine/Threonine-Protein Kinase, Activator, Carbohydrate Binding Module (Cbm)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Xiao, M. J. Sanders, D. Carmena, N. J. Bright, L. F. Haire, E. Underwood, B. R. Patel, R. B. Heath, P. A. Walker, S. Hallen, F. Giordanetto, S. R. Martin, D. Carling, S. J. Gamblin
Structural Basis Of Ampk Regulation By Small Molecule Activators.
Nat. Commun. V. 4 3017 2013
[
close entry info
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
1c: ADENOSINE MONOPHOSPHATE (AMPc)
1d: ADENOSINE MONOPHOSPHATE (AMPd)
2a: 3-[4-(2-HYDROXYPHENYL)PHENYL]-4-OX... (C1Va)
2b: 3-[4-(2-HYDROXYPHENYL)PHENYL]-4-OX... (C1Vb)
3a: PHOSPHOSERINE (SEPa)
3b: PHOSPHOSERINE (SEPb)
4a: STAUROSPORINE (STUa)
4b: STAUROSPORINE (STUb)
5a: PHOSPHOTHREONINE (TPOa)
5b: PHOSPHOTHREONINE (TPOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
4
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
C1V
2
Ligand/Ion
3-[4-(2-HYDROXYPHENYL)PHENYL]-4-OXIDANYL-6-OXIDANYLIDENE-7H-THIENO[2,3-B]PYRIDINE-5-CARBONITRILE
3
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
4
STU
2
Ligand/Ion
STAUROSPORINE
5
TPO
2
Mod. Amino Acid
PHOSPHOTHREONINE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG E:70 , LYS E:170 , ILE E:240 , SER E:242 , PHE E:244 , ASP E:245 , ARG E:269 , VAL E:276 , LEU E:277 , VAL E:297 , HIS E:298 , ARG E:299
BINDING SITE FOR RESIDUE AMP E1326
2
AC2
SOFTWARE
HIS E:151 , THR E:200 , ILE E:204 , ALA E:205 , VAL E:225 , SER E:226 , ALA E:227 , HIS E:298 , ILE E:312 , SER E:314 , SER E:316 , ASP E:317
BINDING SITE FOR RESIDUE AMP E1327
3
AC3
SOFTWARE
ARG F:70 , LYS F:170 , ILE F:240 , SER F:242 , ASP F:245 , ARG F:269 , VAL F:276 , LEU F:277 , VAL F:297 , HIS F:298 , ARG F:299
BINDING SITE FOR RESIDUE AMP F1325
4
AC4
SOFTWARE
HIS F:151 , THR F:200 , ASN F:203 , ILE F:204 , ALA F:205 , VAL F:225 , SER F:226 , ALA F:227 , PRO F:229 , HIS F:298 , ILE F:312 , SER F:314 , SER F:316 , ASP F:317
BINDING SITE FOR RESIDUE AMP F1326
5
AC5
SOFTWARE
LEU A:22 , GLY A:23 , VAL A:24 , GLY A:25 , VAL A:30 , ALA A:43 , LYS A:45 , GLU A:94 , TYR A:95 , VAL A:96 , GLU A:100 , GLU A:143 , ASN A:144 , LEU A:146 , ASP A:157
BINDING SITE FOR RESIDUE STU A1552
6
AC6
SOFTWARE
LEU C:22 , GLY C:23 , VAL C:24 , GLY C:25 , VAL C:30 , ALA C:43 , LYS C:45 , GLU C:94 , TYR C:95 , VAL C:96 , GLU C:100 , GLU C:143 , ASN C:144 , LEU C:146 , ASP C:157
BINDING SITE FOR RESIDUE STU C1552
7
AC7
SOFTWARE
LEU A:18 , GLY A:19 , LYS A:29 , LYS A:31 , ILE A:46 , ASP A:88 , VAL B:81 , ARG B:83 , THR B:106 , ARG B:107 , SEP B:108 , VAL B:113
BINDING SITE FOR RESIDUE C1V B1271
8
AC8
SOFTWARE
GLY C:19 , LYS C:29 , LYS C:31 , ILE C:46 , ASP C:88 , THR D:106 , SEP D:108 , VAL D:113
BINDING SITE FOR RESIDUE C1V C1553
[
close Site info
]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_033453 (T89S, chain E/F, )
2: VAR_035623 (P371T, chain A/C, )
3: VAR_040355 (R407Q, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033453
T
89
S
AAKG1_HUMAN
Polymorphism
1126930
E/F
T
89
S
2
UniProt
VAR_035623
P
371
T
AAPK2_HUMAN
Unclassified
---
A/C
P
371
T
3
UniProt
VAR_040355
R
407
Q
AAPK2_HUMAN
Unclassified
---
A/C
R
407
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:22-45,C:22-45)
2: CBS (E:43-103,F:43-103|E:125-187,F:128-...)
3: PROTEIN_KINASE_ST (A:135-147,C:135-147)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
AAPK2_HUMAN
22-45
2
A:22-45
C:22-45
2
CBS
PS51371
CBS domain profile.
AAKG1_HUMAN
43-103
125-187
198-260
272-329
8
E:43-103
F:43-103
E:125-187
F:128-187
E:198-260
F:198-260
E:272-325
F:272-324
3
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
AAPK2_HUMAN
135-147
2
A:135-147
C:135-147
[
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]
Exons
(9, 18)
Info
All Exons
Exon 1.1 (A:8-32 | C:10-32)
Exon 1.2 (A:32-79 | C:32-79)
Exon 1.3 (A:79-110 | C:79-110)
Exon 1.4 (A:111-159 | C:111-159)
Exon 1.5 (A:159-188 | C:159-188)
Exon 1.6 (A:188-263 | C:188-263)
Exon 1.7 (A:263-431 (gaps) | C:263-431 (gaps...)
Exon 1.8 (A:432-473 | C:432-473)
Exon 1.9 (A:532-551 | C:532-551)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000371244
1
ENSE00001454737
chr1:
57110995-57111154
160
AAPK2_HUMAN
1-32
32
2
A:8-32
C:10-32
25
23
1.2
ENST00000371244
2
ENSE00001064895
chr1:
57140054-57140195
142
AAPK2_HUMAN
32-79
48
2
A:32-79
C:32-79
48
48
1.3
ENST00000371244
3
ENSE00001064887
chr1:
57157067-57157160
94
AAPK2_HUMAN
79-110
32
2
A:79-110
C:79-110
32
32
1.4
ENST00000371244
4
ENSE00001064901
chr1:
57158031-57158175
145
AAPK2_HUMAN
111-159
49
2
A:111-159
C:111-159
49
49
1.5
ENST00000371244
5
ENSE00001064893
chr1:
57159438-57159525
88
AAPK2_HUMAN
159-188
30
2
A:159-188
C:159-188
30
30
1.6
ENST00000371244
6
ENSE00001064889
chr1:
57161608-57161832
225
AAPK2_HUMAN
188-263
76
2
A:188-263
C:188-263
76
76
1.7
ENST00000371244
7
ENSE00001064891
chr1:
57169644-57170148
505
AAPK2_HUMAN
263-431
169
2
A:263-431 (gaps)
C:263-431 (gaps)
169
169
1.8
ENST00000371244
8
ENSE00001064897
chr1:
57171765-57171891
127
AAPK2_HUMAN
432-474
43
2
A:432-473
C:432-473
42
42
1.9
ENST00000371244
9
ENSE00001454729
chr1:
57173148-57181008
7861
AAPK2_HUMAN
474-552
79
2
A:532-551
C:532-551
20
20
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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