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4CEK
Asym. Unit
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Asym.Unit (45 KB)
Biol.Unit 1 (41 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SECOND MIF4G DOMAIN OF HUMAN NONSENSE MEDIATED DECAY FACTOR UPF2
Authors
:
M. Clerici, A. Deniaud, V. Boehm, N. H. Gehring, C. Schaffitzel, S. Cusa
Date
:
11 Nov 13 (Deposition) - 11 Dec 13 (Release) - 12 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transcription
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Clerici, A. Deniaud, V. Boehm, N. H. Gehring, C. Schaffitzel, S. Cusack
Structural And Functional Analysis Of The Three Mif4G Domains Of Nonsense-Mediated Decay Factor Upf2.
Nucleic Acids Res. V. 42 2673 2014
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Hetero Components
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(8, 8)
Info
All Exons
Exon 1.6 (A:457-480)
Exon 1.7 (A:529-548 (gaps))
Exon 1.8b (A:559-586)
Exon 1.9 (A:587-615)
Exon 1.10 (A:615-651)
Exon 1.11 (A:652-689 (gaps))
Exon 1.12 (A:690-728)
Exon 1.13 (A:729-757)
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8b
4: Boundary 1.8b/1.9
5: Boundary 1.9/1.10
6: Boundary 1.10/1.11
7: Boundary 1.11/1.12
8: Boundary 1.12/1.13
9: Boundary 1.13/1.14
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000397053
1b
ENSE00001402467
chr10:
12085023-12084913
111
RENT2_HUMAN
-
0
0
-
-
1.3c
ENST00000397053
3c
ENSE00002187710
chr10:
12077440-12077058
383
RENT2_HUMAN
1-122
122
0
-
-
1.4
ENST00000397053
4
ENSE00000999707
chr10:
12071523-12070744
780
RENT2_HUMAN
122-382
261
0
-
-
1.5
ENST00000397053
5
ENSE00001349465
chr10:
12056183-12056023
161
RENT2_HUMAN
382-436
55
0
-
-
1.6
ENST00000397053
6
ENSE00001213473
chr10:
12046726-12046529
198
RENT2_HUMAN
436-502
67
1
A:457-480
24
1.7
ENST00000397053
7
ENSE00001213468
chr10:
12043824-12043675
150
RENT2_HUMAN
502-552
51
1
A:529-548 (gaps)
21
1.8b
ENST00000397053
8b
ENSE00001213463
chr10:
12042008-12041905
104
RENT2_HUMAN
552-586
35
1
A:559-586
28
1.9
ENST00000397053
9
ENSE00001754391
chr10:
12039756-12039671
86
RENT2_HUMAN
587-615
29
1
A:587-615
29
1.10
ENST00000397053
10
ENSE00001649308
chr10:
12021164-12021056
109
RENT2_HUMAN
615-651
37
1
A:615-651
37
1.11
ENST00000397053
11
ENSE00001649100
chr10:
12009453-12009340
114
RENT2_HUMAN
652-689
38
1
A:652-689 (gaps)
38
1.12
ENST00000397053
12
ENSE00001742008
chr10:
12006124-12006008
117
RENT2_HUMAN
690-728
39
1
A:690-728
39
1.13
ENST00000397053
13
ENSE00001617394
chr10:
12001355-12001170
186
RENT2_HUMAN
729-790
62
1
A:729-757
29
1.14
ENST00000397053
14
ENSE00001724518
chr10:
11998522-11998319
204
RENT2_HUMAN
791-858
68
0
-
-
1.15
ENST00000397053
15
ENSE00001595330
chr10:
11997506-11997231
276
RENT2_HUMAN
859-950
92
0
-
-
1.16
ENST00000397053
16
ENSE00001647744
chr10:
11994248-11994065
184
RENT2_HUMAN
951-1012
62
0
-
-
1.17
ENST00000397053
17
ENSE00001662463
chr10:
11990507-11990368
140
RENT2_HUMAN
1012-1058
47
0
-
-
1.18
ENST00000397053
18
ENSE00001754512
chr10:
11985167-11985063
105
RENT2_HUMAN
1059-1093
35
0
-
-
1.19
ENST00000397053
19
ENSE00001760455
chr10:
11984762-11984664
99
RENT2_HUMAN
1094-1126
33
0
-
-
1.20
ENST00000397053
20
ENSE00001094605
chr10:
11978711-11978544
168
RENT2_HUMAN
1127-1182
56
0
-
-
1.21b
ENST00000397053
21b
ENSE00001094602
chr10:
11973781-11973640
142
RENT2_HUMAN
1183-1230
48
0
-
-
1.22
ENST00000397053
22
ENSE00001094595
chr10:
11971984-11971864
121
RENT2_HUMAN
1230-1270
41
0
-
-
1.23a
ENST00000397053
23a
ENSE00001213550
chr10:
11963306-11962022
1285
RENT2_HUMAN
1270-1272
3
0
-
-
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Asymmetric Unit 1
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Asym.Unit (45 KB)
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