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4CEI
Asym. Unit
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Asym.Unit (408 KB)
Biol.Unit 1 (400 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ADPNP-BOUND ADDAB WITH A FORKED DNA SUBSTRATE
Authors
:
W. W. Krajewski, M. Wilkinson, X. Fu, N. B. Cronin, D. Wigley
Date
:
11 Nov 13 (Deposition) - 12 Mar 14 (Release) - 23 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,X
Biol. Unit 1: A,B,X (1x)
Keywords
:
Hydrolase-Dna Complex, Helicase-Nuclease, Bacterial Proteins, Binding Sites, Dna Breaks, Double-Stranded, Dna Helicases, Dna Repair, Single-Stranded, Dna- Binding Proteins, Deoxyribonucleases, Exodeoxyribonuclease V, Exodeoxyribonucleases, Homologous Recombination
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Gene Ontology, PubMed, Web (Google)
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Reference
:
W. W. Krajewski, X. Fu, M. Wilkinson, N. B. Cronin, M. S. Dillingham, D. B. Wigley
Structural Basis For Translocation By Addab Helicase-Nuclease And Its Arrest At Chi Sites.
Nature V. 508 416 2014
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: IRON/SULFUR CLUSTER (SF4a)
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No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:10 , GLN A:15 , ALA A:32 , GLY A:33 , SER A:34 , GLY A:35 , LYS A:36 , THR A:37 , ALA A:38 , ARG A:76 , GLU A:408 , GLN A:441 , PHE A:478 , ARG A:479 , LYS A:573 , GLY A:798 , GLU A:800 , ARG A:873 , HOH A:2001 , HOH A:2002 , HOH A:2004 , MG A:2234
BINDING SITE FOR RESIDUE ANP A2233
2
AC2
SOFTWARE
THR A:37 , HOH A:2001 , HOH A:2002 , HOH A:2003 , ANP A:2233
BINDING SITE FOR RESIDUE MG A2234
3
AC3
SOFTWARE
CYS B:801 , PRO B:1112 , CYS B:1121 , CYS B:1124 , CYS B:1130
BINDING SITE FOR RESIDUE SF4 B2160
4
AC4
SOFTWARE
SER B:10 , GLY B:11 , GLY B:13 , LYS B:14 , THR B:15 , LYS B:16 , THR B:236 , GLU B:282 , ARG B:283 , GLY B:600 , MET B:656 , HOH B:2001 , HOH B:2002 , HOH B:2004 , MG B:2162
BINDING SITE FOR RESIDUE ANP B2161
5
AC5
SOFTWARE
THR B:15 , ASP B:208 , HOH B:2001 , HOH B:2002 , HOH B:2003 , ANP B:2161
BINDING SITE FOR RESIDUE MG B2162
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: UVRD_HELICASE_ATP_BIND (A:9-481)
2: UVRD_HELICASE_CTER (B:281-586,A:508-798)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UVRD_HELICASE_ATP_BIND
PS51198
UvrD-like DNA helicase ATP-binding domain profile.
ADDA_BACSU
9-481
1
A:9-481
2
UVRD_HELICASE_CTER
PS51217
UvrD-like DNA helicase C-terminal domain profile.
ADDB_BACSU
281-586
1
B:281-586
ADDA_BACSU
508-798
1
A:508-798
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (408 KB)
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