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Getting 'Exon' information from database.
4CDR
Asym. Unit
Info
Asym.Unit (459 KB)
Biol.Unit 1 (119 KB)
Biol.Unit 2 (118 KB)
Biol.Unit 3 (118 KB)
Biol.Unit 4 (119 KB)
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(1)
Title
:
HUMAN O-GLCNAC TRANSFERASE IN COMPLEX WITH A BISUBSTRATE INHIBITOR, GOBLIN1
Authors
:
M. Schimpl, M. Gundogdu, D. M. F. Van Aalten
Date
:
05 Nov 13 (Deposition) - 04 Dec 13 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: D,H (1x)
Biol. Unit 2: C,G (1x)
Biol. Unit 3: B,F (1x)
Biol. Unit 4: A,E (1x)
Keywords
:
Transferase-Transferase Inhibitor Complex, Inverting Gt-B Enzyme, Bi-Substrate Analog Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. S. Borodkin, M. Schimpl, M. Gundogdu, K. Rafie, H. C. Dorfmueller, D. A. Robinson, D. M. Van Aalten
Bisubstrate Udp-Peptide Conjugates As Human O-Glcnac Transferase Inhibitors.
Biochem. J. V. 457 497 2014
[
close entry info
]
Hetero Components
(5, 47)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
1d: ACETYL GROUP (ACEd)
2a: AMINO GROUP (NH2a)
2b: AMINO GROUP (NH2b)
2c: AMINO GROUP (NH2c)
2d: AMINO GROUP (NH2d)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3ac: SULFATE ION (SO4ac)
3ad: SULFATE ION (SO4ad)
3ae: SULFATE ION (SO4ae)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
4a: PROPOXY-L-SERINE (SRZa)
4b: PROPOXY-L-SERINE (SRZb)
4c: PROPOXY-L-SERINE (SRZc)
4d: PROPOXY-L-SERINE (SRZd)
5a: URIDINE-5'-DIPHOSPHATE (UDPa)
5b: URIDINE-5'-DIPHOSPHATE (UDPb)
5c: URIDINE-5'-DIPHOSPHATE (UDPc)
5d: URIDINE-5'-DIPHOSPHATE (UDPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
4
Mod. Amino Acid
ACETYL GROUP
2
NH2
4
Mod. Amino Acid
AMINO GROUP
3
SO4
31
Ligand/Ion
SULFATE ION
4
SRZ
4
Mod. Amino Acid
PROPOXY-L-SERINE
5
UDP
4
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
[
close Hetero Component info
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Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:321 , ASN A:325 , ALA A:352 , ASN A:356
BINDING SITE FOR RESIDUE SO4 A2029
02
AC2
SOFTWARE
LYS A:430 , HIS A:461 , HIS A:499 , THR E:7 , ALA E:8
BINDING SITE FOR RESIDUE SO4 E1009
03
AC3
SOFTWARE
PHE A:602 , ILE A:603 , ASP A:604 , ARG A:617
BINDING SITE FOR RESIDUE SO4 A2030
04
AC4
SOFTWARE
HIS A:601
BINDING SITE FOR RESIDUE SO4 A2031
05
AC5
SOFTWARE
LYS A:685 , HIS A:1025 , ASN C:888
BINDING SITE FOR RESIDUE SO4 A2032
06
AC6
SOFTWARE
ARG A:491 , LEU A:492
BINDING SITE FOR RESIDUE SO4 A2033
07
AC7
SOFTWARE
ARG A:857 , VAL A:971
BINDING SITE FOR RESIDUE SO4 A2034
08
AC8
SOFTWARE
ASN A:962 , ARG A:963
BINDING SITE FOR RESIDUE SO4 A2035
09
AC9
SOFTWARE
ARG A:410 , GLN A:413 , ARG B:410 , ARG D:410
BINDING SITE FOR RESIDUE SO4 A2036
10
BC1
SOFTWARE
ASN B:321 , ASN B:325 , ALA B:352 , ASN B:356
BINDING SITE FOR RESIDUE SO4 B2029
11
BC2
SOFTWARE
LYS B:430 , HIS B:461 , HIS B:499 , THR F:7 , ALA F:8
BINDING SITE FOR RESIDUE SO4 F1009
12
BC3
SOFTWARE
PHE B:602 , ILE B:603 , ASP B:604 , ARG B:617
BINDING SITE FOR RESIDUE SO4 B2030
13
BC4
SOFTWARE
HIS B:601 , LYS C:342
BINDING SITE FOR RESIDUE SO4 B2031
14
BC5
SOFTWARE
ASN A:888 , LYS B:685 , HIS B:1025
BINDING SITE FOR RESIDUE SO4 B2032
15
BC6
SOFTWARE
ARG B:491 , LEU B:492
BINDING SITE FOR RESIDUE SO4 B2033
16
BC7
SOFTWARE
ARG B:857
BINDING SITE FOR RESIDUE SO4 B2034
17
BC8
SOFTWARE
ASN B:962 , ARG B:963
BINDING SITE FOR RESIDUE SO4 B2035
18
BC9
SOFTWARE
ASN C:321 , ASN C:325 , ALA C:352 , ASN C:356
BINDING SITE FOR RESIDUE SO4 C2029
19
CC1
SOFTWARE
LYS C:430 , HIS C:461 , HIS C:499 , THR G:7 , ALA G:8
BINDING SITE FOR RESIDUE SO4 C2030
20
CC2
SOFTWARE
ILE C:603 , ASP C:604 , ARG C:617
BINDING SITE FOR RESIDUE SO4 C2031
21
CC3
SOFTWARE
HIS C:601
BINDING SITE FOR RESIDUE SO4 C2032
22
CC4
SOFTWARE
ARG C:491 , LEU C:492
BINDING SITE FOR RESIDUE SO4 C2033
23
CC5
SOFTWARE
ASN C:962 , ARG C:963
BINDING SITE FOR RESIDUE SO4 C2034
24
CC6
SOFTWARE
ASN D:321 , ASN D:325 , ALA D:352 , ASN D:356
BINDING SITE FOR RESIDUE SO4 D2029
25
CC7
SOFTWARE
HIS D:461 , HIS D:499 , THR H:7 , ALA H:8
BINDING SITE FOR RESIDUE SO4 H1009
26
CC8
SOFTWARE
PHE D:602 , ILE D:603 , ASP D:604 , ARG D:617
BINDING SITE FOR RESIDUE SO4 D2030
27
CC9
SOFTWARE
HIS D:601
BINDING SITE FOR RESIDUE SO4 D2031
28
DC1
SOFTWARE
LYS D:685 , HIS D:1025
BINDING SITE FOR RESIDUE SO4 D2032
29
DC2
SOFTWARE
ARG D:491 , LEU D:492
BINDING SITE FOR RESIDUE SO4 D2033
30
DC3
SOFTWARE
ARG D:857 , VAL D:971
BINDING SITE FOR RESIDUE SO4 D2034
31
DC4
SOFTWARE
ASN D:962 , ARG D:963
BINDING SITE FOR RESIDUE SO4 D2035
32
DC5
SOFTWARE
HIS A:496 , HIS A:498 , HIS A:499 , ASN A:557 , PRO A:559 , TYR A:632 , THR A:633 , LYS A:634 , GLN A:839 , LYS A:842 , VAL A:895 , ALA A:896 , LYS A:898 , HIS A:901 , ARG A:904 , HIS A:920 , THR A:921 , THR A:922 , ASP A:925 , ASP B:318 , SO4 E:1009
BINDING SITE FOR CHAIN E AND UDP E1001
33
DC6
SOFTWARE
ASN B:557 , PRO B:559 , TYR B:632 , THR B:633 , LYS B:634 , GLN B:839 , LYS B:842 , LEU B:866 , VAL B:895 , ALA B:896 , LYS B:898 , HIS B:901 , ARG B:904 , HIS B:920 , THR B:921 , THR B:922 , ASP B:925 , PRO D:314 , SO4 F:1009
BINDING SITE FOR CHAIN F AND UDP F1001
34
DC7
SOFTWARE
HIS C:499 , ASN C:557 , PRO C:559 , TYR C:632 , THR C:633 , LYS C:634 , GLN C:839 , LYS C:842 , LEU C:866 , VAL C:895 , ALA C:896 , LYS C:898 , HIS C:901 , ARG C:904 , HIS C:920 , THR C:921 , THR C:922 , ASP C:925 , SO4 C:2030
BINDING SITE FOR CHAIN G AND UDP G1001
35
DC8
SOFTWARE
PRO A:314 , HIS D:496 , ASN D:557 , PRO D:559 , TYR D:632 , THR D:633 , LYS D:634 , GLN D:839 , LYS D:842 , LEU D:866 , VAL D:895 , ALA D:896 , LYS D:898 , HIS D:901 , ARG D:904 , HIS D:920 , THR D:921 , THR D:922 , ASP D:925 , SO4 H:1009
BINDING SITE FOR CHAIN H AND UDP H1001
[
close Site info
]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_064736 (L528P, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_064736
L
538
P
OGT1_HUMAN
Unclassified
---
A/B/C/D
L
528
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: TPR (-|-|-|-|-|-|-|-|A:317-350,B:317-35...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPR
PS50005
TPR repeat profile.
OGT1_HUMAN
21-54
89-122
123-156
157-190
191-224
225-258
259-292
293-326
327-360
361-394
395-428
429-462
16
-
-
-
-
-
-
-
-
A:317-350
B:317-350
C:317-350
D:317-350
A:351-384
B:351-384
C:351-384
D:351-384
A:385-418
B:385-418
C:385-418
D:385-418
A:419-452
B:419-452
C:419-452
D:419-452
[
close PROSITE info
]
Exons
(15, 60)
Info
All Exons
Exon 1.10b (A:312-345 | B:312-345 | C:312-345 ...)
Exon 1.11c (A:346-379 | B:346-379 | C:346-379 ...)
Exon 1.12c (A:379-430 | B:379-430 | C:379-430 ...)
Exon 1.13 (A:431-464 | B:431-464 | C:431-464 ...)
Exon 1.14 (A:465-524 | B:465-524 | C:465-524 ...)
Exon 1.15 (A:525-577 | B:525-577 | C:525-577 ...)
Exon 1.16 (A:578-607 | B:578-607 | C:578-607 ...)
Exon 1.17 (A:608-649 | B:608-649 | C:608-649 ...)
Exon 1.18 (A:650-706 | B:650-706 | C:650-706 ...)
Exon 1.19 (A:707-745 (gaps) | B:707-745 (gaps...)
Exon 1.20 (A:746-802 (gaps) | B:746-802 (gaps...)
Exon 1.21a (A:803-853 | B:803-853 | C:803-853 ...)
Exon 1.22a (A:854-938 | B:854-938 | C:854-938 ...)
Exon 1.23 (A:938-979 | B:938-979 | C:938-979 ...)
Exon 1.24d (A:979-1028 | B:979-1028 | C:979-10...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.9b/1.10b
02: Boundary 1.10b/1.11c
03: Boundary 1.11c/1.12c
04: Boundary 1.12c/1.13
05: Boundary 1.13/1.14
06: Boundary 1.14/1.15
07: Boundary 1.15/1.16
08: Boundary 1.16/1.17
09: Boundary 1.17/1.18
10: Boundary 1.18/1.19
11: Boundary 1.19/1.20
12: Boundary 1.20/1.21a
13: Boundary 1.21a/1.22a
14: Boundary 1.22a/1.23
15: Boundary 1.23/1.24d
16: Boundary 1.24d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000373719
1a
ENSE00001225746
X:70752933-70753186
254
OGT1_HUMAN
1-13
13
0
-
-
1.3a
ENST00000373719
3a
ENSE00001632316
X:70756028-70756208
181
OGT1_HUMAN
13-73
61
0
-
-
1.5
ENST00000373719
5
ENSE00000978988
X:70757679-70757922
244
OGT1_HUMAN
73-154
82
0
-
-
1.6b
ENST00000373719
6b
ENSE00000978989
X:70764417-70764485
69
OGT1_HUMAN
155-177
23
0
-
-
1.6f
ENST00000373719
6f
ENSE00001154534
X:70767757-70767873
117
OGT1_HUMAN
178-216
39
0
-
-
1.8
ENST00000373719
8
ENSE00001387445
X:70774363-70774442
80
OGT1_HUMAN
217-243
27
0
-
-
1.9b
ENST00000373719
9b
ENSE00001160307
X:70775040-70775235
196
OGT1_HUMAN
243-308
66
0
-
-
1.10b
ENST00000373719
10b
ENSE00001374459
X:70775804-70775944
141
OGT1_HUMAN
309-355
47
4
A:312-345
B:312-345
C:312-345
D:312-345
34
34
34
34
1.11c
ENST00000373719
11c
ENSE00001371885
X:70776530-70776630
101
OGT1_HUMAN
356-389
34
4
A:346-379
B:346-379
C:346-379
D:346-379
34
34
34
34
1.12c
ENST00000373719
12c
ENSE00001387530
X:70776802-70776955
154
OGT1_HUMAN
389-440
52
4
A:379-430
B:379-430
C:379-430
D:379-430
52
52
52
52
1.13
ENST00000373719
13
ENSE00001386377
X:70777045-70777146
102
OGT1_HUMAN
441-474
34
4
A:431-464
B:431-464
C:431-464
D:431-464
34
34
34
34
1.14
ENST00000373719
14
ENSE00001373577
X:70777343-70777522
180
OGT1_HUMAN
475-534
60
4
A:465-524
B:465-524
C:465-524
D:465-524
60
60
60
60
1.15
ENST00000373719
15
ENSE00001371266
X:70779117-70779275
159
OGT1_HUMAN
535-587
53
4
A:525-577
B:525-577
C:525-577
D:525-577
53
53
53
53
1.16
ENST00000373719
16
ENSE00000979031
X:70779438-70779527
90
OGT1_HUMAN
588-617
30
4
A:578-607
B:578-607
C:578-607
D:578-607
30
30
30
30
1.17
ENST00000373719
17
ENSE00000979032
X:70781625-70781750
126
OGT1_HUMAN
618-659
42
4
A:608-649
B:608-649
C:608-649
D:608-649
42
42
42
42
1.18
ENST00000373719
18
ENSE00000979033
X:70782697-70782867
171
OGT1_HUMAN
660-716
57
4
A:650-706
B:650-706
C:650-706
D:650-706
57
57
57
57
1.19
ENST00000373719
19
ENSE00000979034
X:70782980-70783096
117
OGT1_HUMAN
717-755
39
4
A:707-745 (gaps)
B:707-745 (gaps)
C:707-745 (gaps)
D:707-745 (gaps)
39
39
39
39
1.20
ENST00000373719
20
ENSE00001385236
X:70783179-70783349
171
OGT1_HUMAN
756-812
57
4
A:746-802 (gaps)
B:746-802 (gaps)
C:746-802 (gaps)
D:746-802 (gaps)
57
57
57
57
1.21a
ENST00000373719
21a
ENSE00001368007
X:70784451-70784603
153
OGT1_HUMAN
813-863
51
4
A:803-853
B:803-853
C:803-853
D:803-853
51
51
51
51
1.22a
ENST00000373719
22a
ENSE00001389126
X:70787350-70787602
253
OGT1_HUMAN
864-948
85
4
A:854-938
B:854-938
C:854-938
D:854-938
85
85
85
85
1.23
ENST00000373719
23
ENSE00001160190
X:70787843-70787966
124
OGT1_HUMAN
948-989
42
4
A:938-979
B:938-979
C:938-979
D:938-979
42
42
42
42
1.24d
ENST00000373719
24d
ENSE00001820698
X:70793470-70795747
2278
OGT1_HUMAN
989-1046
58
4
A:979-1028
B:979-1028
C:979-1028
D:979-1028
50
50
50
50
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Show PDB file:
Asym.Unit (459 KB)
Header - Asym.Unit
Biol.Unit 1 (119 KB)
Header - Biol.Unit 1
Biol.Unit 2 (118 KB)
Header - Biol.Unit 2
Biol.Unit 3 (118 KB)
Header - Biol.Unit 3
Biol.Unit 4 (119 KB)
Header - Biol.Unit 4
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