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4CDR
Biol. Unit 4
Info
Asym.Unit (459 KB)
Biol.Unit 1 (119 KB)
Biol.Unit 2 (118 KB)
Biol.Unit 3 (118 KB)
Biol.Unit 4 (119 KB)
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(1)
Title
:
HUMAN O-GLCNAC TRANSFERASE IN COMPLEX WITH A BISUBSTRATE INHIBITOR, GOBLIN1
Authors
:
M. Schimpl, M. Gundogdu, D. M. F. Van Aalten
Date
:
05 Nov 13 (Deposition) - 04 Dec 13 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: D,H (1x)
Biol. Unit 2: C,G (1x)
Biol. Unit 3: B,F (1x)
Biol. Unit 4: A,E (1x)
Keywords
:
Transferase-Transferase Inhibitor Complex, Inverting Gt-B Enzyme, Bi-Substrate Analog Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. S. Borodkin, M. Schimpl, M. Gundogdu, K. Rafie, H. C. Dorfmueller, D. A. Robinson, D. M. Van Aalten
Bisubstrate Udp-Peptide Conjugates As Human O-Glcnac Transferase Inhibitors.
Biochem. J. V. 457 497 2014
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
1d: ACETYL GROUP (ACEd)
2a: AMINO GROUP (NH2a)
2b: AMINO GROUP (NH2b)
2c: AMINO GROUP (NH2c)
2d: AMINO GROUP (NH2d)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3ac: SULFATE ION (SO4ac)
3ad: SULFATE ION (SO4ad)
3ae: SULFATE ION (SO4ae)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
4a: PROPOXY-L-SERINE (SRZa)
4b: PROPOXY-L-SERINE (SRZb)
4c: PROPOXY-L-SERINE (SRZc)
4d: PROPOXY-L-SERINE (SRZd)
5a: URIDINE-5'-DIPHOSPHATE (UDPa)
5b: URIDINE-5'-DIPHOSPHATE (UDPb)
5c: URIDINE-5'-DIPHOSPHATE (UDPc)
5d: URIDINE-5'-DIPHOSPHATE (UDPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
NH2
1
Mod. Amino Acid
AMINO GROUP
3
SO4
9
Ligand/Ion
SULFATE ION
4
SRZ
1
Mod. Amino Acid
PROPOXY-L-SERINE
5
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC5 (SOFTWARE)
11: DC5 (SOFTWARE)
12: DC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:321 , ASN A:325 , ALA A:352 , ASN A:356
BINDING SITE FOR RESIDUE SO4 A2029
02
AC2
SOFTWARE
LYS A:430 , HIS A:461 , HIS A:499 , THR E:7 , ALA E:8
BINDING SITE FOR RESIDUE SO4 E1009
03
AC3
SOFTWARE
PHE A:602 , ILE A:603 , ASP A:604 , ARG A:617
BINDING SITE FOR RESIDUE SO4 A2030
04
AC4
SOFTWARE
HIS A:601
BINDING SITE FOR RESIDUE SO4 A2031
05
AC5
SOFTWARE
LYS A:685 , HIS A:1025 , ASN C:888
BINDING SITE FOR RESIDUE SO4 A2032
06
AC6
SOFTWARE
ARG A:491 , LEU A:492
BINDING SITE FOR RESIDUE SO4 A2033
07
AC7
SOFTWARE
ARG A:857 , VAL A:971
BINDING SITE FOR RESIDUE SO4 A2034
08
AC8
SOFTWARE
ASN A:962 , ARG A:963
BINDING SITE FOR RESIDUE SO4 A2035
09
AC9
SOFTWARE
ARG A:410 , GLN A:413 , ARG B:410 , ARG D:410
BINDING SITE FOR RESIDUE SO4 A2036
10
BC5
SOFTWARE
ASN A:888 , LYS B:685 , HIS B:1025
BINDING SITE FOR RESIDUE SO4 B2032
11
DC5
SOFTWARE
HIS A:496 , HIS A:498 , HIS A:499 , ASN A:557 , PRO A:559 , TYR A:632 , THR A:633 , LYS A:634 , GLN A:839 , LYS A:842 , VAL A:895 , ALA A:896 , LYS A:898 , HIS A:901 , ARG A:904 , HIS A:920 , THR A:921 , THR A:922 , ASP A:925 , ASP B:318 , SO4 E:1009
BINDING SITE FOR CHAIN E AND UDP E1001
12
DC8
SOFTWARE
PRO A:314 , HIS D:496 , ASN D:557 , PRO D:559 , TYR D:632 , THR D:633 , LYS D:634 , GLN D:839 , LYS D:842 , LEU D:866 , VAL D:895 , ALA D:896 , LYS D:898 , HIS D:901 , ARG D:904 , HIS D:920 , THR D:921 , THR D:922 , ASP D:925 , SO4 H:1009
BINDING SITE FOR CHAIN H AND UDP H1001
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_064736 (L528P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_064736
L
538
P
OGT1_HUMAN
Unclassified
---
A
L
528
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: TPR (A:317-350,A:351-384,A:385-418,A:41...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPR
PS50005
TPR repeat profile.
OGT1_HUMAN
21-54
89-122
123-156
157-190
191-224
225-258
259-292
293-326
327-360
361-394
395-428
429-462
4
-
-
-
-
-
-
-
-
A:317-350
-
-
-
A:351-384
-
-
-
A:385-418
-
-
-
A:419-452
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (459 KB)
Header - Asym.Unit
Biol.Unit 1 (119 KB)
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Biol.Unit 2 (118 KB)
Header - Biol.Unit 2
Biol.Unit 3 (118 KB)
Header - Biol.Unit 3
Biol.Unit 4 (119 KB)
Header - Biol.Unit 4
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