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4CDR
Biol. Unit 1
Info
Asym.Unit (459 KB)
Biol.Unit 1 (119 KB)
Biol.Unit 2 (118 KB)
Biol.Unit 3 (118 KB)
Biol.Unit 4 (119 KB)
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(1)
Title
:
HUMAN O-GLCNAC TRANSFERASE IN COMPLEX WITH A BISUBSTRATE INHIBITOR, GOBLIN1
Authors
:
M. Schimpl, M. Gundogdu, D. M. F. Van Aalten
Date
:
05 Nov 13 (Deposition) - 04 Dec 13 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: D,H (1x)
Biol. Unit 2: C,G (1x)
Biol. Unit 3: B,F (1x)
Biol. Unit 4: A,E (1x)
Keywords
:
Transferase-Transferase Inhibitor Complex, Inverting Gt-B Enzyme, Bi-Substrate Analog Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. S. Borodkin, M. Schimpl, M. Gundogdu, K. Rafie, H. C. Dorfmueller, D. A. Robinson, D. M. Van Aalten
Bisubstrate Udp-Peptide Conjugates As Human O-Glcnac Transferase Inhibitors.
Biochem. J. V. 457 497 2014
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
1d: ACETYL GROUP (ACEd)
2a: AMINO GROUP (NH2a)
2b: AMINO GROUP (NH2b)
2c: AMINO GROUP (NH2c)
2d: AMINO GROUP (NH2d)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3ac: SULFATE ION (SO4ac)
3ad: SULFATE ION (SO4ad)
3ae: SULFATE ION (SO4ae)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
4a: PROPOXY-L-SERINE (SRZa)
4b: PROPOXY-L-SERINE (SRZb)
4c: PROPOXY-L-SERINE (SRZc)
4d: PROPOXY-L-SERINE (SRZd)
5a: URIDINE-5'-DIPHOSPHATE (UDPa)
5b: URIDINE-5'-DIPHOSPHATE (UDPb)
5c: URIDINE-5'-DIPHOSPHATE (UDPc)
5d: URIDINE-5'-DIPHOSPHATE (UDPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
NH2
1
Mod. Amino Acid
AMINO GROUP
3
SO4
8
Ligand/Ion
SULFATE ION
4
SRZ
1
Mod. Amino Acid
PROPOXY-L-SERINE
5
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
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Sites
(11, 11)
Info
All Sites
01: AC9 (SOFTWARE)
02: CC6 (SOFTWARE)
03: CC7 (SOFTWARE)
04: CC8 (SOFTWARE)
05: CC9 (SOFTWARE)
06: DC1 (SOFTWARE)
07: DC2 (SOFTWARE)
08: DC3 (SOFTWARE)
09: DC4 (SOFTWARE)
10: DC6 (SOFTWARE)
11: DC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC9
SOFTWARE
ARG A:410 , GLN A:413 , ARG B:410 , ARG D:410
BINDING SITE FOR RESIDUE SO4 A2036
02
CC6
SOFTWARE
ASN D:321 , ASN D:325 , ALA D:352 , ASN D:356
BINDING SITE FOR RESIDUE SO4 D2029
03
CC7
SOFTWARE
HIS D:461 , HIS D:499 , THR H:7 , ALA H:8
BINDING SITE FOR RESIDUE SO4 H1009
04
CC8
SOFTWARE
PHE D:602 , ILE D:603 , ASP D:604 , ARG D:617
BINDING SITE FOR RESIDUE SO4 D2030
05
CC9
SOFTWARE
HIS D:601
BINDING SITE FOR RESIDUE SO4 D2031
06
DC1
SOFTWARE
LYS D:685 , HIS D:1025
BINDING SITE FOR RESIDUE SO4 D2032
07
DC2
SOFTWARE
ARG D:491 , LEU D:492
BINDING SITE FOR RESIDUE SO4 D2033
08
DC3
SOFTWARE
ARG D:857 , VAL D:971
BINDING SITE FOR RESIDUE SO4 D2034
09
DC4
SOFTWARE
ASN D:962 , ARG D:963
BINDING SITE FOR RESIDUE SO4 D2035
10
DC6
SOFTWARE
ASN B:557 , PRO B:559 , TYR B:632 , THR B:633 , LYS B:634 , GLN B:839 , LYS B:842 , LEU B:866 , VAL B:895 , ALA B:896 , LYS B:898 , HIS B:901 , ARG B:904 , HIS B:920 , THR B:921 , THR B:922 , ASP B:925 , PRO D:314 , SO4 F:1009
BINDING SITE FOR CHAIN F AND UDP F1001
11
DC8
SOFTWARE
PRO A:314 , HIS D:496 , ASN D:557 , PRO D:559 , TYR D:632 , THR D:633 , LYS D:634 , GLN D:839 , LYS D:842 , LEU D:866 , VAL D:895 , ALA D:896 , LYS D:898 , HIS D:901 , ARG D:904 , HIS D:920 , THR D:921 , THR D:922 , ASP D:925 , SO4 H:1009
BINDING SITE FOR CHAIN H AND UDP H1001
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_064736 (L528P, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_064736
L
538
P
OGT1_HUMAN
Unclassified
---
D
L
528
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: TPR (D:419-452)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPR
PS50005
TPR repeat profile.
OGT1_HUMAN
21-54
89-122
123-156
157-190
191-224
225-258
259-292
293-326
327-360
361-394
395-428
429-462
4
-
-
-
-
-
-
-
-
-
-
-
D:317-350
-
-
-
D:351-384
-
-
-
D:385-418
-
-
-
D:419-452
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain D
Chain H
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (459 KB)
Header - Asym.Unit
Biol.Unit 1 (119 KB)
Header - Biol.Unit 1
Biol.Unit 2 (118 KB)
Header - Biol.Unit 2
Biol.Unit 3 (118 KB)
Header - Biol.Unit 3
Biol.Unit 4 (119 KB)
Header - Biol.Unit 4
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