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4CDN
Biol. Unit 2
Info
Asym.Unit (328 KB)
Biol.Unit 1 (167 KB)
Biol.Unit 2 (157 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF M. MAZEI PHOTOLYASE WITH ITS IN VIVO RECONSTITUTED 8-HDF ANTENNA CHROMOPHORE
Authors
:
S. Kiontke, A. Batschauer, L. -O. Essen
Date
:
01 Nov 13 (Deposition) - 21 May 14 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Lyase, Photolyase, Dna Repair, Methanosarcina Mazei, Antenna Chromophore, 8-Hdf, Fad
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Kiontke, P. Gnau, R. Haselsberger, A. Batschauer, L. Essen
Structural And Evolutionary Aspects Of Antenna Chromophore Usage By Class Ii Photolyases.
J. Biol. Chem. V. 289 19659 2014
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: 1-DEOXY-1-(8-HYDROXY-2,4-DIOXO-3,4... (FO1a)
2b: 1-DEOXY-1-(8-HYDROXY-2,4-DIOXO-3,4... (FO1b)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
5a: TRIETHYLENE GLYCOL (PGEa)
5b: TRIETHYLENE GLYCOL (PGEb)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
View:
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No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
FO1
1
Ligand/Ion
1-DEOXY-1-(8-HYDROXY-2,4-DIOXO-3,4-DIHYDROPYRIMIDO[4,5-B]QUINOLIN-10(2H)-YL)-D-RIBITOL
3
GOL
2
Ligand/Ion
GLYCEROL
4
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PGE
-1
Ligand/Ion
TRIETHYLENE GLYCOL
6
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
TYR B:252 , LEU B:264 , SER B:265 , ASN B:266 , LEU B:267 , SER B:268 , LEU B:271 , PHE B:298 , GLU B:301 , ILE B:302 , TRP B:305 , LYS B:306 , LYS B:372 , GLY B:375 , ARG B:378 , MET B:379 , ALA B:382 , ASN B:403 , ASP B:409 , GLY B:410 , ASN B:414 , GLY B:415 , SER B:422 , GOL B:1464 , HOH B:2182 , HOH B:2197 , HOH B:2261 , HOH B:2262 , HOH B:2281
BINDING SITE FOR RESIDUE FAD B 998
02
AC4
SOFTWARE
SER B:26 , ARG B:27 , PHE B:55 , CYS B:56 , LEU B:57 , THR B:58 , PHE B:61 , ALA B:64 , MET B:72 , SER B:118 , LYS B:123 , TRP B:126 , HIS B:272 , PHE B:273 , ARG B:411 , HOH B:2024 , HOH B:2026 , HOH B:2027 , HOH B:2100
BINDING SITE FOR RESIDUE FO1 B 999
03
AC5
SOFTWARE
ASN B:266 , GLU B:366 , THR B:370 , LYS B:372 , HOH B:2165 , HOH B:2195
BINDING SITE FOR RESIDUE GOL B1463
04
AC8
SOFTWARE
TRP B:305 , MET B:379 , GLY B:418 , TRP B:421 , FAD B:998 , HOH B:2188 , HOH B:2206 , HOH B:2281
BINDING SITE FOR RESIDUE GOL B1464
05
AC9
SOFTWARE
PRO A:172 , GLU A:173 , GLU A:176 , HOH A:2375 , HOH A:2376 , GLU B:70 , LYS B:74
BINDING SITE FOR RESIDUE GOL A1465
06
BC1
SOFTWARE
ALA B:159 , ALA B:160 , HIS B:161 , ARG B:164 , HOH B:2134
BINDING SITE FOR RESIDUE SO4 B1465
07
BC3
SOFTWARE
TYR A:168 , GLU A:286 , HOH B:2159
BINDING SITE FOR RESIDUE SO4 B1466
08
BC4
SOFTWARE
LYS A:354 , THR A:355 , HIS A:356 , ASN A:361 , PEG A:1472 , HOH A:2319 , LYS B:354 , THR B:355 , HIS B:356 , ASN B:361 , HOH B:2259
BINDING SITE FOR RESIDUE PGE A1467
09
BC6
SOFTWARE
LEU A:-4 , SER A:13 , GLY A:14 , GLN A:16 , PRO A:137 , PHE A:139 , HOH A:2377 , PHE B:322 , GLU B:323 , ASN B:334 , ARG B:337
BINDING SITE FOR RESIDUE PGE A1469
10
BC9
SOFTWARE
HIS A:356 , PRO A:358 , TYR A:445 , PGE A:1467 , HOH A:2317 , LYS B:354 , HOH B:2252
BINDING SITE FOR RESIDUE PEG A1472
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Asymmetric Unit 1
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Asym.Unit (328 KB)
Header - Asym.Unit
Biol.Unit 1 (167 KB)
Header - Biol.Unit 1
Biol.Unit 2 (157 KB)
Header - Biol.Unit 2
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