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Getting 'Biological Unit' information from database.
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4CDB
Asym. Unit
Info
Asym.Unit (181 KB)
Biol.Unit 1 (176 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LISTERIOLYSIN O
Authors
:
S. Koester, O. Yildiz
Date
:
30 Oct 13 (Deposition) - 23 Apr 14 (Release) - 07 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Toxin, Cholesterol Dependent Cytolysin, Membrane Perforation, Hemolysis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Koester, K. V. Pee, M. Hudel, M. Leustik, D. Rhinow, W. Kuehlbrandt, T. Chakraborty, O. Yildiz
Crystal Structure Of Listeriolysin O Reveals Molecular Details Of Oligomerization And Pore Formation
Nat. Commun. V. 5 3690 2014
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
2g: SODIUM ION (NAg)
2h: SODIUM ION (NAh)
2i: SODIUM ION (NAi)
2j: SODIUM ION (NAj)
2k: SODIUM ION (NAk)
2l: SODIUM ION (NAl)
2m: SODIUM ION (NAm)
2n: SODIUM ION (NAn)
2o: SODIUM ION (NAo)
3a: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
NA
15
Ligand/Ion
SODIUM ION
3
TAM
1
Ligand/Ion
TRIS(HYDROXYETHYL)AMINOMETHANE
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:85 , PRO A:87 , GLN A:430 , LYS A:482 , TRP A:492 , HOH A:2229
BINDING SITE FOR RESIDUE ACT A1527
02
AC2
SOFTWARE
ASN A:432 , PRO A:442 , ASN A:478 , VAL A:479 , TYR A:480 , ASP A:497 , ASP A:498 , HOH A:2231
BINDING SITE FOR RESIDUE ACT A1528
03
AC3
SOFTWARE
LEU A:68 , TYR A:70 , LYS A:393 , ASP A:394 , NA A:1541
BINDING SITE FOR RESIDUE ACT A1529
04
AC4
SOFTWARE
GLU A:214 , NA A:1544 , HOH A:2160
BINDING SITE FOR RESIDUE ACT A1530
05
AC5
SOFTWARE
ASP A:207 , ASP A:208 , LYS A:220
BINDING SITE FOR RESIDUE NA A1531
06
AC6
SOFTWARE
TYR A:212 , GLN A:245 , THR A:409 , HOH A:2154 , HOH A:2167
BINDING SITE FOR RESIDUE NA A1532
07
AC7
SOFTWARE
ILE A:218 , GLY A:222 , ASN A:402 , HOH A:2079 , HOH A:2111
BINDING SITE FOR RESIDUE NA A1533
08
AC8
SOFTWARE
TYR A:440 , GLU A:446
BINDING SITE FOR RESIDUE NA A1534
09
AC9
SOFTWARE
SER A:123 , THR A:125 , ASN A:179
BINDING SITE FOR RESIDUE NA A1535
10
BC1
SOFTWARE
GLU A:209 , GLN A:216 , TYR A:406
BINDING SITE FOR RESIDUE NA A1536
11
BC2
SOFTWARE
LYS A:148 , ARG A:149 , ASN A:172
BINDING SITE FOR RESIDUE NA A1537
12
BC3
SOFTWARE
TYR A:126 , ARG A:149 , ALA A:173 , HOH A:2104
BINDING SITE FOR RESIDUE NA A1538
13
BC4
SOFTWARE
GLN A:116 , PHE A:221 , TYR A:303 , HOH A:2086
BINDING SITE FOR RESIDUE NA A1539
14
BC5
SOFTWARE
VAL A:147 , GLN A:278 , HOH A:2116
BINDING SITE FOR RESIDUE NA A1540
15
BC6
SOFTWARE
TYR A:70 , PHE A:391 , ASP A:394 , ACT A:1529
BINDING SITE FOR RESIDUE NA A1541
16
BC7
SOFTWARE
GLU A:247 , ASP A:320
BINDING SITE FOR RESIDUE NA A1542
17
BC8
SOFTWARE
ASP A:81 , GLU A:214 , SER A:215
BINDING SITE FOR RESIDUE NA A1543
18
BC9
SOFTWARE
GLU A:214 , ASN A:229 , ACT A:1530 , HOH A:2160
BINDING SITE FOR RESIDUE NA A1544
19
CC1
SOFTWARE
TYR A:348 , HOH A:2161
BINDING SITE FOR RESIDUE NA A1545
20
CC2
SOFTWARE
SER A:466 , SER A:467 , THR A:494 , VAL A:495 , ILE A:496 , ASP A:497 , ASP A:498 , TYR A:520
BINDING SITE FOR RESIDUE TAM A1546
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TACY_LISMO_002 (V438I, chain A, )
2: VAR_TACY_LISMO_003 (K523S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TACY_LISMO_002
*
V
438
I
TACY_LISMO
---
---
A
V
438
I
2
UniProt
VAR_TACY_LISMO_003
*
K
523
S
TACY_LISMO
---
---
A
K
523
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: THIOL_CYTOLYSINS (A:482-493)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_CYTOLYSINS
PS00481
Thiol-activated cytolysins signature.
TACY_LISMO
482-493
1
A:482-493
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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