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4CCL
Asym. Unit
Info
Asym.Unit (268 KB)
Biol.Unit 1 (258 KB)
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(1)
Title
:
X-RAY STRUCTURE OF E. COLI YCFD
Authors
:
M. A. Mcdonough, C. H. Ho, N. J. Kershaw, C. J. Schofield
Date
:
23 Oct 13 (Deposition) - 30 Apr 14 (Release) - 25 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, 2Og And Iron Dependent Oxygenase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Chowdhury, R. Sekirnik, N. C. Brissett, T. Krojer, C. -H. Ho, S. S. Ng I. J. Clifton, W. Ge, N. J. Kershaw, G. C. Fox, J. R. C. Muniz, M. Vollmar, C. Phillips, E. S. Pilka, K. L. Kavanagh, F. Von Deflt, U. Oppermann, M. A. Mcdonough, A. J. Doherty, C. J. Schofield
Ribosomal Oxygenases Are Structurally Conserved From Prokaryotes To Humans.
Nature V. 510 422 2014
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Hetero Components
(3, 32)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
4
Ligand/Ion
MANGANESE (II) ION
2
MSE
19
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
9
Ligand/Ion
SULFATE ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:125 , ASP A:127 , HIS A:187
BINDING SITE FOR RESIDUE MN A1373
02
AC2
SOFTWARE
ASP A:11
BINDING SITE FOR RESIDUE MN A1374
03
AC3
SOFTWARE
HIS B:56 , ASP B:58
BINDING SITE FOR RESIDUE MN B1373
04
AC4
SOFTWARE
HIS B:329
BINDING SITE FOR RESIDUE MN B1374
05
AC5
SOFTWARE
LEU B:82 , MSE B:112 , SER B:114 , ARG B:140 , TRP B:142 , HOH B:2030 , HOH B:2050 , HOH B:2052 , HOH B:2055 , HOH B:2074
BINDING SITE FOR RESIDUE SO4 B1375
06
AC6
SOFTWARE
LEU A:82 , MSE A:112 , SER A:114 , VAL A:122 , ARG A:140 , TRP A:142
BINDING SITE FOR RESIDUE SO4 A1375
07
AC7
SOFTWARE
HIS A:329 , PRO A:331 , ASP A:349 , ALA A:350 , HOH A:2054
BINDING SITE FOR RESIDUE SO4 A1376
08
AC8
SOFTWARE
ARG B:15 , HIS B:16 , VAL B:22 , HOH B:2017
BINDING SITE FOR RESIDUE SO4 B1376
09
AC9
SOFTWARE
ARG A:15 , HIS A:16 , VAL A:22 , HOH A:2055
BINDING SITE FOR RESIDUE SO4 A1377
10
BC1
SOFTWARE
ARG A:101 , ASN A:339 , ILE A:340
BINDING SITE FOR RESIDUE SO4 A1378
11
BC2
SOFTWARE
GLU A:222 , GLY A:225 , ARG B:208
BINDING SITE FOR RESIDUE SO4 A1379
12
BC3
SOFTWARE
ASN B:339 , ILE B:340
BINDING SITE FOR RESIDUE SO4 B1377
13
BC4
SOFTWARE
ASP A:241 , ASP A:291 , HOH A:2037 , ARG B:313 , GLY B:315 , ARG B:330
BINDING SITE FOR RESIDUE SO4 B1378
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: JMJC (A:92-219,B:92-219)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JMJC
PS51184
JmjC domain profile.
ROXA_ECOLI
92-219
2
A:92-219
B:92-219
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (268 KB)
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