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4CC9
Asym. Unit
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Asym.Unit (149 KB)
Biol.Unit 1 (141 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SAMHD1 (AMINO ACID RESIDUES 582-626) BOUND TO VPX ISOLATED FROM SOOTY MANGABEY AND HUMAN DCAF1 (AMINO ACID RESIDUES 1058-1396)
Authors
:
D. Schwefel, H. C. T. Groom, V. C. Boucherit, E. Christodoulou, P. A. Wal J. P. Stoye, K. N. Bishop, I. A. Taylor
Date
:
19 Oct 13 (Deposition) - 11 Dec 13 (Release) - 08 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.47
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Protein Binding, Hiv, Siv, Retroviral Restriction Factor, Retroviral Accessory Protein, Ubiquitination, Proteasomal Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Schwefel, H. C. T. Groom, V. C. Boucherit, E. Christodoulou, P. A. Walker, J. P. Stoye, K. N. Bishop, I. A. Taylor
Structural Basis Of Lentiviral Subversion Of A Cellular Protein Degradation Pathway.
Nature V. 505 234 2014
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: TETRAETHYLENE GLYCOL (PG4a)
1b: TETRAETHYLENE GLYCOL (PG4b)
2a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:1284 , HIS A:1286
BINDING SITE FOR RESIDUE PG4 A2393
2
AC2
SOFTWARE
ALA A:1377 , LEU A:1378 , ARG B:51 , ARG B:70
BINDING SITE FOR RESIDUE PG4 A2394
3
AC3
SOFTWARE
HIS B:39 , HIS B:82 , CYS B:87 , CYS B:89
BINDING SITE FOR RESIDUE ZN B1112
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(1, 1)
Info
All Exons
Exon 1.16 (C:606-624)
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All Exon Boundaries
1: Boundary 1.15a/1.16
2: Boundary 1.16/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000262878
1a
ENSE00001898623
chr20:
35580246-35579839
408
SAMH1_HUMAN
1-70
70
0
-
-
1.2
ENST00000262878
2
ENSE00001678776
chr20:
35575207-35575141
67
SAMH1_HUMAN
70-92
23
0
-
-
1.3
ENST00000262878
3
ENSE00001650543
chr20:
35569514-35569442
73
SAMH1_HUMAN
92-116
25
0
-
-
1.4
ENST00000262878
4
ENSE00001681376
chr20:
35563592-35563432
161
SAMH1_HUMAN
117-170
54
0
-
-
1.5
ENST00000262878
5
ENSE00001594973
chr20:
35559278-35559163
116
SAMH1_HUMAN
170-209
40
0
-
-
1.6
ENST00000262878
6
ENSE00001630356
chr20:
35555655-35555585
71
SAMH1_HUMAN
209-232
24
0
-
-
1.7
ENST00000262878
7
ENSE00001752622
chr20:
35547922-35547767
156
SAMH1_HUMAN
233-284
52
0
-
-
1.8
ENST00000262878
8
ENSE00001667406
chr20:
35545452-35545352
101
SAMH1_HUMAN
285-318
34
0
-
-
1.9
ENST00000262878
9
ENSE00001793017
chr20:
35545233-35545125
109
SAMH1_HUMAN
318-354
37
0
-
-
1.10
ENST00000262878
10
ENSE00001711142
chr20:
35540955-35540864
92
SAMH1_HUMAN
355-385
31
0
-
-
1.11
ENST00000262878
11
ENSE00001622813
chr20:
35539736-35539621
116
SAMH1_HUMAN
385-424
40
0
-
-
1.12a
ENST00000262878
12a
ENSE00000661815
chr20:
35533906-35533767
140
SAMH1_HUMAN
424-470
47
0
-
-
1.13
ENST00000262878
13
ENSE00000661814
chr20:
35532652-35532560
93
SAMH1_HUMAN
471-501
31
0
-
-
1.14
ENST00000262878
14
ENSE00000661813
chr20:
35526947-35526843
105
SAMH1_HUMAN
502-536
35
0
-
-
1.15a
ENST00000262878
15a
ENSE00000661812
chr20:
35526362-35526225
138
SAMH1_HUMAN
537-582
46
0
-
-
1.16
ENST00000262878
16
ENSE00000800455
chr20:
35521469-35518632
2838
SAMH1_HUMAN
583-626
44
1
C:606-624
19
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (149 KB)
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