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4CBB
Asym. Unit
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (704 KB)
Biol.Unit 2 (710 KB)
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(1)
Title
:
APO FORM OF BETAINE ALDEHYDE DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA
Authors
:
L. Gonzalez-Segura, A. G. Diaz-Sanchez, R. A. Munoz-Clares
Date
:
11 Oct 13 (Deposition) - 29 Oct 14 (Release) - 29 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: E,F,G,H (1x)
Biol. Unit 2: A,B,C,D (1x)
Keywords
:
Oxidoreductase, Aldehyde Oxidation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. G. Diaz-Sanchez, L. Gonzalez-Segura, R. Rodriguez-Sotres, C. Mujica-Jimenez, R. A. Munoz-Clares
The Structural Bases Of The Dual Coenzyme Specificity Of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
To Be Published
[
close entry info
]
Hetero Components
(5, 72)
Info
All Hetero Components
1a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
1b: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTb)
1c: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTc)
1d: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTd)
1e: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTe)
1f: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTf)
1g: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTg)
1h: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTh)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
4i: POTASSIUM ION (Ki)
4j: POTASSIUM ION (Kj)
4k: POTASSIUM ION (Kk)
4l: POTASSIUM ION (Kl)
4m: POTASSIUM ION (Km)
4n: POTASSIUM ION (Kn)
4o: POTASSIUM ION (Ko)
4p: POTASSIUM ION (Kp)
4q: POTASSIUM ION (Kq)
4r: POTASSIUM ION (Kr)
4s: POTASSIUM ION (Ks)
4t: POTASSIUM ION (Kt)
4u: POTASSIUM ION (Ku)
4v: POTASSIUM ION (Kv)
4w: POTASSIUM ION (Kw)
4x: POTASSIUM ION (Kx)
5a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
5b: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4b)
5c: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4c)
5d: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4d)
5e: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4e)
5f: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4f)
5g: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4g)
5h: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DTT
8
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
2
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
22
Ligand/Ion
GLYCEROL
4
K
24
Ligand/Ion
POTASSIUM ION
5
PE4
8
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
[
close Hetero Component info
]
Sites
(72, 72)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:229 , GLY A:230 , LEU A:253 , GLY A:254 , CYS A:286 , GLU A:387 , PHE A:389
BINDING SITE FOR RESIDUE DTT A1491
02
AC2
SOFTWARE
GLY B:229 , GLY B:230 , LEU B:253 , GLY B:254 , CYS B:286 , GLU B:387 , PHE B:389
BINDING SITE FOR RESIDUE DTT B1491
03
AC3
SOFTWARE
GLY C:229 , GLY C:230 , LEU C:253 , GLY C:254 , CYS C:286 , GLU C:387 , PHE C:389
BINDING SITE FOR RESIDUE DTT C1491
04
AC4
SOFTWARE
GLY D:229 , GLY D:230 , CYS D:286 , GLU D:387 , PHE D:389
BINDING SITE FOR RESIDUE DTT D1491
05
AC5
SOFTWARE
GLY E:229 , GLY E:230 , LEU E:253 , GLY E:254 , CYS E:286 , GLU E:387 , PHE E:389
BINDING SITE FOR RESIDUE DTT E1491
06
AC6
SOFTWARE
GLY F:229 , GLY F:230 , CYS F:286 , GLU F:387 , PHE F:389
BINDING SITE FOR RESIDUE DTT F1491
07
AC7
SOFTWARE
GLY G:229 , GLY G:230 , LEU G:253 , GLY G:254 , CYS G:286 , GLU G:387 , HOH G:2479
BINDING SITE FOR RESIDUE DTT G1491
08
AC8
SOFTWARE
GLY H:229 , GLY H:230 , LEU H:253 , CYS H:286 , GLU H:387 , PHE H:389
BINDING SITE FOR RESIDUE DTT H1491
09
AC9
SOFTWARE
SER B:336 , GLY B:339
BINDING SITE FOR RESIDUE EDO B1492
10
BC1
SOFTWARE
GLU F:252 , VAL F:453 , GOL F:1494 , HOH F:2302 , HOH F:2303 , HOH F:2422
BINDING SITE FOR RESIDUE EDO F1492
11
BC2
SOFTWARE
TRP E:161 , GLU E:252 , CYS E:286 , VAL E:453 , GOL E:1494 , HOH E:2338 , HOH E:2363 , HOH E:2490
BINDING SITE FOR RESIDUE EDO E1492
12
BC3
SOFTWARE
HOH A:2533 , ARG C:269 , ASN C:442 , GLU D:482 , GLY D:484
BINDING SITE FOR RESIDUE EDO C1492
13
BC4
SOFTWARE
TRP G:161 , GLU G:252 , LEU G:415 , GOL G:1497 , HOH G:2300 , HOH G:2448
BINDING SITE FOR RESIDUE EDO G1492
14
BC5
SOFTWARE
GLU C:252 , VAL C:453 , GOL C:1495 , HOH C:2266 , HOH C:2396 , HOH C:2431
BINDING SITE FOR RESIDUE EDO C1493
15
BC6
SOFTWARE
ARG D:131 , THR D:133 , GLU D:482 , GLY D:484 , ASP D:485
BINDING SITE FOR RESIDUE EDO D1492
16
BC7
SOFTWARE
ILE G:149 , GLY G:150 , LYS G:176 , PRO G:177 , SER G:178 , GLY G:209 , HOH G:2254 , HOH G:2482
BINDING SITE FOR RESIDUE EDO G1493
17
BC8
SOFTWARE
ASP A:379 , ASP A:380 , ASP A:410 , HOH A:2498 , HOH G:2004
BINDING SITE FOR RESIDUE EDO A1492
18
BC9
SOFTWARE
MET D:276 , GLY D:445 , PE4 D:1494 , HOH D:2283 , HOH D:2373
BINDING SITE FOR RESIDUE EDO D1493
19
CC1
SOFTWARE
VAL C:489 , SER D:103 , VAL D:104 , MET D:276 , GLU D:446 , EDO D:1493 , K D:1499 , HOH D:2390
BINDING SITE FOR RESIDUE PE4 D1494
20
CC2
SOFTWARE
VAL A:104 , TRP A:444 , GLY A:445 , GLU A:446 , GOL A:1494 , K A:1499 , HOH A:2553 , HOH A:2594 , HOH A:2595 , HOH A:2596 , TYR B:486 , VAL B:489
BINDING SITE FOR RESIDUE PE4 A1493
21
CC3
SOFTWARE
TYR A:486 , ALA A:487 , VAL A:489 , VAL B:104 , MET B:276 , TRP B:444 , GLU B:446 , K B:1501 , HOH B:2468
BINDING SITE FOR RESIDUE PE4 B1493
22
CC4
SOFTWARE
SER C:103 , VAL C:104 , MET C:276 , PHE C:280 , TRP C:444 , GLY C:445 , GLU C:446 , K C:1501 , HOH C:2287 , TYR D:486 , ALA D:487 , VAL D:489
BINDING SITE FOR RESIDUE PE4 C1494
23
CC5
SOFTWARE
SER E:103 , VAL E:104 , MET E:276 , TRP E:444 , GLU E:446 , K E:1498 , HOH E:2488 , HOH E:2523 , TYR F:486 , ALA F:487
BINDING SITE FOR RESIDUE PE4 E1493
24
CC6
SOFTWARE
TYR G:486 , ALA G:487 , VAL G:489 , SER H:103 , VAL H:104 , TRP H:444 , GLU H:446 , K H:1496 , HOH H:2298
BINDING SITE FOR RESIDUE PE4 H1492
25
CC7
SOFTWARE
SER G:103 , VAL G:104 , MET G:276 , TRP G:444 , GLU G:446 , K G:1500 , HOH G:2034 , HOH G:2484 , TYR H:486 , ALA H:487 , VAL H:489
BINDING SITE FOR RESIDUE PE4 G1494
26
CC8
SOFTWARE
ALA E:487 , VAL E:489 , SER F:103 , VAL F:104 , MET F:276 , TRP F:444 , GLY F:445 , GLU F:446 , K F:1498 , HOH F:2438
BINDING SITE FOR RESIDUE PE4 F1493
27
CC9
SOFTWARE
TYR B:154 , GLN B:157 , GOL B:1498 , HOH B:2263 , HOH B:2264 , HOH B:2345
BINDING SITE FOR RESIDUE GOL B1494
28
DC1
SOFTWARE
PHE G:4 , GLN G:7 , LYS G:187 , HOH G:2010 , HOH G:2019
BINDING SITE FOR RESIDUE GOL G1495
29
DC2
SOFTWARE
GLU G:401 , ALA G:425 , ARG G:426 , ARG G:429 , HOH G:2434
BINDING SITE FOR RESIDUE GOL G1496
30
DC3
SOFTWARE
TYR C:154 , GLN C:157 , EDO C:1493 , HOH C:2212 , HOH C:2213 , HOH C:2294 , HOH C:2431
BINDING SITE FOR RESIDUE GOL C1495
31
DC4
SOFTWARE
TYR F:154 , GLN F:157 , VAL F:285 , EDO F:1492 , HOH F:2244 , HOH F:2245 , HOH F:2322 , HOH F:2439
BINDING SITE FOR RESIDUE GOL F1494
32
DC5
SOFTWARE
GLN G:157 , VAL G:285 , EDO G:1492 , HOH G:2246 , HOH G:2247 , HOH G:2329 , HOH G:2481
BINDING SITE FOR RESIDUE GOL G1497
33
DC6
SOFTWARE
PHE B:4 , GLN B:7 , LYS B:187 , HOH B:2008
BINDING SITE FOR RESIDUE GOL B1495
34
DC7
SOFTWARE
HIS A:432 , LEU A:434 , GLU A:435 , HOH A:2545 , ARG B:139 , GLU B:141 , LYS B:477 , HOH B:2244
BINDING SITE FOR RESIDUE GOL B1496
35
DC8
SOFTWARE
TYR A:154 , GLN A:157 , PE4 A:1493 , HOH A:2299 , HOH A:2406 , HOH A:2598
BINDING SITE FOR RESIDUE GOL A1494
36
DC9
SOFTWARE
GLU G:248 , VAL G:249 , GLU H:248 , VAL H:249
BINDING SITE FOR RESIDUE GOL H1493
37
EC1
SOFTWARE
GLN D:157 , VAL D:285 , HOH D:2202 , HOH D:2204 , HOH D:2284 , HOH D:2393
BINDING SITE FOR RESIDUE GOL D1495
38
EC2
SOFTWARE
SER C:336 , GLY C:339 , TYR C:340
BINDING SITE FOR RESIDUE GOL C1496
39
EC3
SOFTWARE
ARG B:131 , THR B:133 , GLU B:482 , ASP B:485 , HOH B:2464
BINDING SITE FOR RESIDUE GOL B1497
40
EC4
SOFTWARE
TRP B:161 , GLU B:252 , GOL B:1494 , HOH B:2303 , HOH B:2323 , HOH B:2452 , HOH B:2467
BINDING SITE FOR RESIDUE GOL B1498
41
EC5
SOFTWARE
PHE F:4 , GLN F:7 , LYS F:187 , HOH F:2006
BINDING SITE FOR RESIDUE GOL F1495
42
EC6
SOFTWARE
TYR E:154 , GLN E:157 , EDO E:1492 , HOH E:2267 , HOH E:2363 , HOH E:2365 , HOH E:2522
BINDING SITE FOR RESIDUE GOL E1494
43
EC7
SOFTWARE
PHE D:4 , GLN D:7 , LYS D:187 , HOH D:2011 , HOH D:2394
BINDING SITE FOR RESIDUE GOL D1496
44
EC8
SOFTWARE
ALA A:61 , ALA A:62 , MET A:63 , ARG A:68 , HOH A:2144 , HOH A:2601 , ARG C:131
BINDING SITE FOR RESIDUE GOL A1495
45
EC9
SOFTWARE
GLU A:248 , VAL A:249 , VAL A:461 , GLU B:248 , VAL B:249 , VAL B:461
BINDING SITE FOR RESIDUE GOL A1496
46
FC1
SOFTWARE
PHE A:4 , GLU A:5 , SER E:20 , ARG E:40 , ALA E:41 , SER E:42 , VAL E:212 , HOH E:2086 , HOH E:2524
BINDING SITE FOR RESIDUE GOL E1495
47
FC2
SOFTWARE
GLN C:7 , LYS C:187 , HOH C:2007 , HOH C:2013
BINDING SITE FOR RESIDUE GOL C1497
48
FC3
SOFTWARE
GLY C:209 , GLY C:213 , GLN C:214 , HOH C:2255 , HOH C:2435
BINDING SITE FOR RESIDUE GOL C1498
49
FC4
SOFTWARE
THR A:26 , ILE A:27 , ASP A:93 , VAL A:180 , HOH A:2080
BINDING SITE FOR RESIDUE K A1497
50
FC5
SOFTWARE
LYS A:457 , GLY A:460 , HOH A:2564 , LEU B:246 , HOH B:2298
BINDING SITE FOR RESIDUE K A1498
51
FC6
SOFTWARE
THR B:26 , ILE B:27 , ASP B:93 , VAL B:180 , HOH B:2064 , HOH B:2066
BINDING SITE FOR RESIDUE K B1499
52
FC7
SOFTWARE
LEU A:246 , HOH A:2345 , HOH A:2369 , LYS B:457 , GLY B:460
BINDING SITE FOR RESIDUE K B1500
53
FC8
SOFTWARE
THR C:26 , ILE C:27 , ASP C:93 , VAL C:180 , HOH C:2054 , HOH C:2056
BINDING SITE FOR RESIDUE K C1499
54
FC9
SOFTWARE
LYS C:457 , GLY C:460 , HOH C:2400 , HOH C:2403 , LEU D:246 , HOH D:2241
BINDING SITE FOR RESIDUE K C1500
55
GC1
SOFTWARE
THR D:26 , ILE D:27 , ASP D:93 , VAL D:180 , HOH D:2052
BINDING SITE FOR RESIDUE K D1497
56
GC2
SOFTWARE
LEU C:246 , HOH C:2242 , HOH C:2262 , LYS D:457 , GLY D:460
BINDING SITE FOR RESIDUE K D1498
57
GC3
SOFTWARE
THR E:26 , ILE E:27 , ASP E:93 , VAL E:180 , HOH E:2065
BINDING SITE FOR RESIDUE K E1496
58
GC4
SOFTWARE
LYS E:457 , GLY E:460 , HOH E:2496 , LEU F:246 , HOH F:2279
BINDING SITE FOR RESIDUE K E1497
59
GC5
SOFTWARE
THR F:26 , ILE F:27 , ASP F:93 , VAL F:180 , HOH F:2065
BINDING SITE FOR RESIDUE K F1496
60
GC6
SOFTWARE
THR G:26 , ILE G:27 , ASP G:93 , VAL G:180 , HOH G:2073
BINDING SITE FOR RESIDUE K G1498
61
GC7
SOFTWARE
LEU G:246 , HOH G:2280 , HOH G:2296 , LYS H:457 , GLY H:460
BINDING SITE FOR RESIDUE K H1494
62
GC8
SOFTWARE
LYS G:457 , GLY G:460 , HOH G:2453 , LEU H:246 , HOH H:2175
BINDING SITE FOR RESIDUE K G1499
63
GC9
SOFTWARE
THR H:26 , ILE H:27 , ASP H:93 , VAL H:180 , HOH H:2034
BINDING SITE FOR RESIDUE K H1495
64
HC1
SOFTWARE
LEU E:246 , HOH E:2306 , HOH E:2332 , LYS F:457 , GLY F:460
BINDING SITE FOR RESIDUE K F1497
65
HC2
SOFTWARE
PE4 A:1493 , HOH A:2594 , HOH A:2595
BINDING SITE FOR RESIDUE K A1499
66
HC3
SOFTWARE
PE4 B:1493 , HOH B:2261
BINDING SITE FOR RESIDUE K B1501
67
HC4
SOFTWARE
PE4 D:1494 , HOH D:2390
BINDING SITE FOR RESIDUE K D1499
68
HC5
SOFTWARE
PE4 C:1494
BINDING SITE FOR RESIDUE K C1501
69
HC6
SOFTWARE
PE4 E:1493
BINDING SITE FOR RESIDUE K E1498
70
HC7
SOFTWARE
PE4 H:1492 , HOH H:2298
BINDING SITE FOR RESIDUE K H1496
71
HC8
SOFTWARE
PE4 G:1494 , HOH G:2483
BINDING SITE FOR RESIDUE K G1500
72
HC9
SOFTWARE
PE4 F:1493
BINDING SITE FOR RESIDUE K F1498
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:251-258,B:251-258,C:251-258,D:25...)
2: ALDEHYDE_DEHYDR_CYS (A:279-290,B:279-290,C:279-290,D:27...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
BETB_PSEAE
251-258
8
A:251-258
B:251-258
C:251-258
D:251-258
E:251-258
F:251-258
G:251-258
H:251-258
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
BETB_PSEAE
279-290
8
A:279-290
B:279-290
C:279-290
D:279-290
E:279-290
F:279-290
G:279-290
H:279-290
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain D
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Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (1.4 MB)
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Biol.Unit 1 (704 KB)
Header - Biol.Unit 1
Biol.Unit 2 (710 KB)
Header - Biol.Unit 2
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