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4CBB
Biol. Unit 2
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Asym.Unit (1.4 MB)
Biol.Unit 1 (704 KB)
Biol.Unit 2 (710 KB)
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(1)
Title
:
APO FORM OF BETAINE ALDEHYDE DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA
Authors
:
L. Gonzalez-Segura, A. G. Diaz-Sanchez, R. A. Munoz-Clares
Date
:
11 Oct 13 (Deposition) - 29 Oct 14 (Release) - 29 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: E,F,G,H (1x)
Biol. Unit 2: A,B,C,D (1x)
Keywords
:
Oxidoreductase, Aldehyde Oxidation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. G. Diaz-Sanchez, L. Gonzalez-Segura, R. Rodriguez-Sotres, C. Mujica-Jimenez, R. A. Munoz-Clares
The Structural Bases Of The Dual Coenzyme Specificity Of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
To Be Published
[
close entry info
]
Hetero Components
(4, 28)
Info
All Hetero Components
1a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
1b: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTb)
1c: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTc)
1d: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTd)
1e: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTe)
1f: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTf)
1g: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTg)
1h: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTh)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
4i: POTASSIUM ION (Ki)
4j: POTASSIUM ION (Kj)
4k: POTASSIUM ION (Kk)
4l: POTASSIUM ION (Kl)
4m: POTASSIUM ION (Km)
4n: POTASSIUM ION (Kn)
4o: POTASSIUM ION (Ko)
4p: POTASSIUM ION (Kp)
4q: POTASSIUM ION (Kq)
4r: POTASSIUM ION (Kr)
4s: POTASSIUM ION (Ks)
4t: POTASSIUM ION (Kt)
4u: POTASSIUM ION (Ku)
4v: POTASSIUM ION (Kv)
4w: POTASSIUM ION (Kw)
4x: POTASSIUM ION (Kx)
5a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
5b: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4b)
5c: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4c)
5d: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4d)
5e: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4e)
5f: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4f)
5g: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4g)
5h: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DTT
4
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
14
Ligand/Ion
GLYCEROL
4
K
-1
Ligand/Ion
POTASSIUM ION
5
PE4
4
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
[
close Hetero Component info
]
Sites
(41, 41)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
14: CC4 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC3 (SOFTWARE)
17: DC6 (SOFTWARE)
18: DC7 (SOFTWARE)
19: DC8 (SOFTWARE)
20: EC1 (SOFTWARE)
21: EC2 (SOFTWARE)
22: EC3 (SOFTWARE)
23: EC4 (SOFTWARE)
24: EC7 (SOFTWARE)
25: EC8 (SOFTWARE)
26: EC9 (SOFTWARE)
27: FC1 (SOFTWARE)
28: FC2 (SOFTWARE)
29: FC3 (SOFTWARE)
30: FC4 (SOFTWARE)
31: FC5 (SOFTWARE)
32: FC6 (SOFTWARE)
33: FC7 (SOFTWARE)
34: FC8 (SOFTWARE)
35: FC9 (SOFTWARE)
36: GC1 (SOFTWARE)
37: GC2 (SOFTWARE)
38: HC2 (SOFTWARE)
39: HC3 (SOFTWARE)
40: HC4 (SOFTWARE)
41: HC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:229 , GLY A:230 , LEU A:253 , GLY A:254 , CYS A:286 , GLU A:387 , PHE A:389
BINDING SITE FOR RESIDUE DTT A1491
02
AC2
SOFTWARE
GLY B:229 , GLY B:230 , LEU B:253 , GLY B:254 , CYS B:286 , GLU B:387 , PHE B:389
BINDING SITE FOR RESIDUE DTT B1491
03
AC3
SOFTWARE
GLY C:229 , GLY C:230 , LEU C:253 , GLY C:254 , CYS C:286 , GLU C:387 , PHE C:389
BINDING SITE FOR RESIDUE DTT C1491
04
AC4
SOFTWARE
GLY D:229 , GLY D:230 , CYS D:286 , GLU D:387 , PHE D:389
BINDING SITE FOR RESIDUE DTT D1491
05
AC9
SOFTWARE
SER B:336 , GLY B:339
BINDING SITE FOR RESIDUE EDO B1492
06
BC3
SOFTWARE
HOH A:2533 , ARG C:269 , ASN C:442 , GLU D:482 , GLY D:484
BINDING SITE FOR RESIDUE EDO C1492
07
BC5
SOFTWARE
GLU C:252 , VAL C:453 , GOL C:1495 , HOH C:2266 , HOH C:2396 , HOH C:2431
BINDING SITE FOR RESIDUE EDO C1493
08
BC6
SOFTWARE
ARG D:131 , THR D:133 , GLU D:482 , GLY D:484 , ASP D:485
BINDING SITE FOR RESIDUE EDO D1492
09
BC8
SOFTWARE
ASP A:379 , ASP A:380 , ASP A:410 , HOH A:2498 , HOH G:2004
BINDING SITE FOR RESIDUE EDO A1492
10
BC9
SOFTWARE
MET D:276 , GLY D:445 , PE4 D:1494 , HOH D:2283 , HOH D:2373
BINDING SITE FOR RESIDUE EDO D1493
11
CC1
SOFTWARE
VAL C:489 , SER D:103 , VAL D:104 , MET D:276 , GLU D:446 , EDO D:1493 , K D:1499 , HOH D:2390
BINDING SITE FOR RESIDUE PE4 D1494
12
CC2
SOFTWARE
VAL A:104 , TRP A:444 , GLY A:445 , GLU A:446 , GOL A:1494 , K A:1499 , HOH A:2553 , HOH A:2594 , HOH A:2595 , HOH A:2596 , TYR B:486 , VAL B:489
BINDING SITE FOR RESIDUE PE4 A1493
13
CC3
SOFTWARE
TYR A:486 , ALA A:487 , VAL A:489 , VAL B:104 , MET B:276 , TRP B:444 , GLU B:446 , K B:1501 , HOH B:2468
BINDING SITE FOR RESIDUE PE4 B1493
14
CC4
SOFTWARE
SER C:103 , VAL C:104 , MET C:276 , PHE C:280 , TRP C:444 , GLY C:445 , GLU C:446 , K C:1501 , HOH C:2287 , TYR D:486 , ALA D:487 , VAL D:489
BINDING SITE FOR RESIDUE PE4 C1494
15
CC9
SOFTWARE
TYR B:154 , GLN B:157 , GOL B:1498 , HOH B:2263 , HOH B:2264 , HOH B:2345
BINDING SITE FOR RESIDUE GOL B1494
16
DC3
SOFTWARE
TYR C:154 , GLN C:157 , EDO C:1493 , HOH C:2212 , HOH C:2213 , HOH C:2294 , HOH C:2431
BINDING SITE FOR RESIDUE GOL C1495
17
DC6
SOFTWARE
PHE B:4 , GLN B:7 , LYS B:187 , HOH B:2008
BINDING SITE FOR RESIDUE GOL B1495
18
DC7
SOFTWARE
HIS A:432 , LEU A:434 , GLU A:435 , HOH A:2545 , ARG B:139 , GLU B:141 , LYS B:477 , HOH B:2244
BINDING SITE FOR RESIDUE GOL B1496
19
DC8
SOFTWARE
TYR A:154 , GLN A:157 , PE4 A:1493 , HOH A:2299 , HOH A:2406 , HOH A:2598
BINDING SITE FOR RESIDUE GOL A1494
20
EC1
SOFTWARE
GLN D:157 , VAL D:285 , HOH D:2202 , HOH D:2204 , HOH D:2284 , HOH D:2393
BINDING SITE FOR RESIDUE GOL D1495
21
EC2
SOFTWARE
SER C:336 , GLY C:339 , TYR C:340
BINDING SITE FOR RESIDUE GOL C1496
22
EC3
SOFTWARE
ARG B:131 , THR B:133 , GLU B:482 , ASP B:485 , HOH B:2464
BINDING SITE FOR RESIDUE GOL B1497
23
EC4
SOFTWARE
TRP B:161 , GLU B:252 , GOL B:1494 , HOH B:2303 , HOH B:2323 , HOH B:2452 , HOH B:2467
BINDING SITE FOR RESIDUE GOL B1498
24
EC7
SOFTWARE
PHE D:4 , GLN D:7 , LYS D:187 , HOH D:2011 , HOH D:2394
BINDING SITE FOR RESIDUE GOL D1496
25
EC8
SOFTWARE
ALA A:61 , ALA A:62 , MET A:63 , ARG A:68 , HOH A:2144 , HOH A:2601 , ARG C:131
BINDING SITE FOR RESIDUE GOL A1495
26
EC9
SOFTWARE
GLU A:248 , VAL A:249 , VAL A:461 , GLU B:248 , VAL B:249 , VAL B:461
BINDING SITE FOR RESIDUE GOL A1496
27
FC1
SOFTWARE
PHE A:4 , GLU A:5 , SER E:20 , ARG E:40 , ALA E:41 , SER E:42 , VAL E:212 , HOH E:2086 , HOH E:2524
BINDING SITE FOR RESIDUE GOL E1495
28
FC2
SOFTWARE
GLN C:7 , LYS C:187 , HOH C:2007 , HOH C:2013
BINDING SITE FOR RESIDUE GOL C1497
29
FC3
SOFTWARE
GLY C:209 , GLY C:213 , GLN C:214 , HOH C:2255 , HOH C:2435
BINDING SITE FOR RESIDUE GOL C1498
30
FC4
SOFTWARE
THR A:26 , ILE A:27 , ASP A:93 , VAL A:180 , HOH A:2080
BINDING SITE FOR RESIDUE K A1497
31
FC5
SOFTWARE
LYS A:457 , GLY A:460 , HOH A:2564 , LEU B:246 , HOH B:2298
BINDING SITE FOR RESIDUE K A1498
32
FC6
SOFTWARE
THR B:26 , ILE B:27 , ASP B:93 , VAL B:180 , HOH B:2064 , HOH B:2066
BINDING SITE FOR RESIDUE K B1499
33
FC7
SOFTWARE
LEU A:246 , HOH A:2345 , HOH A:2369 , LYS B:457 , GLY B:460
BINDING SITE FOR RESIDUE K B1500
34
FC8
SOFTWARE
THR C:26 , ILE C:27 , ASP C:93 , VAL C:180 , HOH C:2054 , HOH C:2056
BINDING SITE FOR RESIDUE K C1499
35
FC9
SOFTWARE
LYS C:457 , GLY C:460 , HOH C:2400 , HOH C:2403 , LEU D:246 , HOH D:2241
BINDING SITE FOR RESIDUE K C1500
36
GC1
SOFTWARE
THR D:26 , ILE D:27 , ASP D:93 , VAL D:180 , HOH D:2052
BINDING SITE FOR RESIDUE K D1497
37
GC2
SOFTWARE
LEU C:246 , HOH C:2242 , HOH C:2262 , LYS D:457 , GLY D:460
BINDING SITE FOR RESIDUE K D1498
38
HC2
SOFTWARE
PE4 A:1493 , HOH A:2594 , HOH A:2595
BINDING SITE FOR RESIDUE K A1499
39
HC3
SOFTWARE
PE4 B:1493 , HOH B:2261
BINDING SITE FOR RESIDUE K B1501
40
HC4
SOFTWARE
PE4 D:1494 , HOH D:2390
BINDING SITE FOR RESIDUE K D1499
41
HC5
SOFTWARE
PE4 C:1494
BINDING SITE FOR RESIDUE K C1501
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:251-258,B:251-258,C:251-258,D:25...)
2: ALDEHYDE_DEHYDR_CYS (A:279-290,B:279-290,C:279-290,D:27...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
BETB_PSEAE
251-258
4
A:251-258
B:251-258
C:251-258
D:251-258
-
-
-
-
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
BETB_PSEAE
279-290
4
A:279-290
B:279-290
C:279-290
D:279-290
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
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Info
all CATH domains
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[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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