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Biol. Unit 1
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (704 KB)
Biol.Unit 2 (710 KB)
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(1)
Title
:
APO FORM OF BETAINE ALDEHYDE DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA
Authors
:
L. Gonzalez-Segura, A. G. Diaz-Sanchez, R. A. Munoz-Clares
Date
:
11 Oct 13 (Deposition) - 29 Oct 14 (Release) - 29 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: E,F,G,H (1x)
Biol. Unit 2: A,B,C,D (1x)
Keywords
:
Oxidoreductase, Aldehyde Oxidation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. G. Diaz-Sanchez, L. Gonzalez-Segura, R. Rodriguez-Sotres, C. Mujica-Jimenez, R. A. Munoz-Clares
The Structural Bases Of The Dual Coenzyme Specificity Of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
To Be Published
[
close entry info
]
Hetero Components
(4, 20)
Info
All Hetero Components
1a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
1b: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTb)
1c: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTc)
1d: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTd)
1e: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTe)
1f: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTf)
1g: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTg)
1h: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTh)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
4i: POTASSIUM ION (Ki)
4j: POTASSIUM ION (Kj)
4k: POTASSIUM ION (Kk)
4l: POTASSIUM ION (Kl)
4m: POTASSIUM ION (Km)
4n: POTASSIUM ION (Kn)
4o: POTASSIUM ION (Ko)
4p: POTASSIUM ION (Kp)
4q: POTASSIUM ION (Kq)
4r: POTASSIUM ION (Kr)
4s: POTASSIUM ION (Ks)
4t: POTASSIUM ION (Kt)
4u: POTASSIUM ION (Ku)
4v: POTASSIUM ION (Kv)
4w: POTASSIUM ION (Kw)
4x: POTASSIUM ION (Kx)
5a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
5b: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4b)
5c: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4c)
5d: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4d)
5e: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4e)
5f: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4f)
5g: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4g)
5h: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DTT
4
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
8
Ligand/Ion
GLYCEROL
4
K
-1
Ligand/Ion
POTASSIUM ION
5
PE4
4
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: CC5 (SOFTWARE)
11: CC6 (SOFTWARE)
12: CC7 (SOFTWARE)
13: CC8 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC2 (SOFTWARE)
16: DC4 (SOFTWARE)
17: DC5 (SOFTWARE)
18: DC9 (SOFTWARE)
19: EC5 (SOFTWARE)
20: EC6 (SOFTWARE)
21: FC1 (SOFTWARE)
22: GC3 (SOFTWARE)
23: GC4 (SOFTWARE)
24: GC5 (SOFTWARE)
25: GC6 (SOFTWARE)
26: GC7 (SOFTWARE)
27: GC8 (SOFTWARE)
28: GC9 (SOFTWARE)
29: HC1 (SOFTWARE)
30: HC6 (SOFTWARE)
31: HC7 (SOFTWARE)
32: HC8 (SOFTWARE)
33: HC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
GLY E:229 , GLY E:230 , LEU E:253 , GLY E:254 , CYS E:286 , GLU E:387 , PHE E:389
BINDING SITE FOR RESIDUE DTT E1491
02
AC6
SOFTWARE
GLY F:229 , GLY F:230 , CYS F:286 , GLU F:387 , PHE F:389
BINDING SITE FOR RESIDUE DTT F1491
03
AC7
SOFTWARE
GLY G:229 , GLY G:230 , LEU G:253 , GLY G:254 , CYS G:286 , GLU G:387 , HOH G:2479
BINDING SITE FOR RESIDUE DTT G1491
04
AC8
SOFTWARE
GLY H:229 , GLY H:230 , LEU H:253 , CYS H:286 , GLU H:387 , PHE H:389
BINDING SITE FOR RESIDUE DTT H1491
05
BC1
SOFTWARE
GLU F:252 , VAL F:453 , GOL F:1494 , HOH F:2302 , HOH F:2303 , HOH F:2422
BINDING SITE FOR RESIDUE EDO F1492
06
BC2
SOFTWARE
TRP E:161 , GLU E:252 , CYS E:286 , VAL E:453 , GOL E:1494 , HOH E:2338 , HOH E:2363 , HOH E:2490
BINDING SITE FOR RESIDUE EDO E1492
07
BC4
SOFTWARE
TRP G:161 , GLU G:252 , LEU G:415 , GOL G:1497 , HOH G:2300 , HOH G:2448
BINDING SITE FOR RESIDUE EDO G1492
08
BC7
SOFTWARE
ILE G:149 , GLY G:150 , LYS G:176 , PRO G:177 , SER G:178 , GLY G:209 , HOH G:2254 , HOH G:2482
BINDING SITE FOR RESIDUE EDO G1493
09
BC8
SOFTWARE
ASP A:379 , ASP A:380 , ASP A:410 , HOH A:2498 , HOH G:2004
BINDING SITE FOR RESIDUE EDO A1492
10
CC5
SOFTWARE
SER E:103 , VAL E:104 , MET E:276 , TRP E:444 , GLU E:446 , K E:1498 , HOH E:2488 , HOH E:2523 , TYR F:486 , ALA F:487
BINDING SITE FOR RESIDUE PE4 E1493
11
CC6
SOFTWARE
TYR G:486 , ALA G:487 , VAL G:489 , SER H:103 , VAL H:104 , TRP H:444 , GLU H:446 , K H:1496 , HOH H:2298
BINDING SITE FOR RESIDUE PE4 H1492
12
CC7
SOFTWARE
SER G:103 , VAL G:104 , MET G:276 , TRP G:444 , GLU G:446 , K G:1500 , HOH G:2034 , HOH G:2484 , TYR H:486 , ALA H:487 , VAL H:489
BINDING SITE FOR RESIDUE PE4 G1494
13
CC8
SOFTWARE
ALA E:487 , VAL E:489 , SER F:103 , VAL F:104 , MET F:276 , TRP F:444 , GLY F:445 , GLU F:446 , K F:1498 , HOH F:2438
BINDING SITE FOR RESIDUE PE4 F1493
14
DC1
SOFTWARE
PHE G:4 , GLN G:7 , LYS G:187 , HOH G:2010 , HOH G:2019
BINDING SITE FOR RESIDUE GOL G1495
15
DC2
SOFTWARE
GLU G:401 , ALA G:425 , ARG G:426 , ARG G:429 , HOH G:2434
BINDING SITE FOR RESIDUE GOL G1496
16
DC4
SOFTWARE
TYR F:154 , GLN F:157 , VAL F:285 , EDO F:1492 , HOH F:2244 , HOH F:2245 , HOH F:2322 , HOH F:2439
BINDING SITE FOR RESIDUE GOL F1494
17
DC5
SOFTWARE
GLN G:157 , VAL G:285 , EDO G:1492 , HOH G:2246 , HOH G:2247 , HOH G:2329 , HOH G:2481
BINDING SITE FOR RESIDUE GOL G1497
18
DC9
SOFTWARE
GLU G:248 , VAL G:249 , GLU H:248 , VAL H:249
BINDING SITE FOR RESIDUE GOL H1493
19
EC5
SOFTWARE
PHE F:4 , GLN F:7 , LYS F:187 , HOH F:2006
BINDING SITE FOR RESIDUE GOL F1495
20
EC6
SOFTWARE
TYR E:154 , GLN E:157 , EDO E:1492 , HOH E:2267 , HOH E:2363 , HOH E:2365 , HOH E:2522
BINDING SITE FOR RESIDUE GOL E1494
21
FC1
SOFTWARE
PHE A:4 , GLU A:5 , SER E:20 , ARG E:40 , ALA E:41 , SER E:42 , VAL E:212 , HOH E:2086 , HOH E:2524
BINDING SITE FOR RESIDUE GOL E1495
22
GC3
SOFTWARE
THR E:26 , ILE E:27 , ASP E:93 , VAL E:180 , HOH E:2065
BINDING SITE FOR RESIDUE K E1496
23
GC4
SOFTWARE
LYS E:457 , GLY E:460 , HOH E:2496 , LEU F:246 , HOH F:2279
BINDING SITE FOR RESIDUE K E1497
24
GC5
SOFTWARE
THR F:26 , ILE F:27 , ASP F:93 , VAL F:180 , HOH F:2065
BINDING SITE FOR RESIDUE K F1496
25
GC6
SOFTWARE
THR G:26 , ILE G:27 , ASP G:93 , VAL G:180 , HOH G:2073
BINDING SITE FOR RESIDUE K G1498
26
GC7
SOFTWARE
LEU G:246 , HOH G:2280 , HOH G:2296 , LYS H:457 , GLY H:460
BINDING SITE FOR RESIDUE K H1494
27
GC8
SOFTWARE
LYS G:457 , GLY G:460 , HOH G:2453 , LEU H:246 , HOH H:2175
BINDING SITE FOR RESIDUE K G1499
28
GC9
SOFTWARE
THR H:26 , ILE H:27 , ASP H:93 , VAL H:180 , HOH H:2034
BINDING SITE FOR RESIDUE K H1495
29
HC1
SOFTWARE
LEU E:246 , HOH E:2306 , HOH E:2332 , LYS F:457 , GLY F:460
BINDING SITE FOR RESIDUE K F1497
30
HC6
SOFTWARE
PE4 E:1493
BINDING SITE FOR RESIDUE K E1498
31
HC7
SOFTWARE
PE4 H:1492 , HOH H:2298
BINDING SITE FOR RESIDUE K H1496
32
HC8
SOFTWARE
PE4 G:1494 , HOH G:2483
BINDING SITE FOR RESIDUE K G1500
33
HC9
SOFTWARE
PE4 F:1493
BINDING SITE FOR RESIDUE K F1498
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (E:251-258,F:251-258,G:251-258,H:25...)
2: ALDEHYDE_DEHYDR_CYS (E:279-290,F:279-290,G:279-290,H:27...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
BETB_PSEAE
251-258
4
-
-
-
-
E:251-258
F:251-258
G:251-258
H:251-258
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
BETB_PSEAE
279-290
4
-
-
-
-
E:279-290
F:279-290
G:279-290
H:279-290
[
close PROSITE info
]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (1.4 MB)
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Biol.Unit 1 (704 KB)
Header - Biol.Unit 1
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