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4CAZ
Asym. Unit
Info
Asym.Unit (365 KB)
Biol.Unit 1 (701 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH NADH
Authors
:
L. Gonzalez-Segura, A. G. Diaz-Sanchez, R. A. Munoz-Clares
Date
:
09 Oct 13 (Deposition) - 29 Oct 14 (Release) - 29 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Aldehyde Oxidation, Nadh Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. G. Diaz-Sanchez, L. Gonzalez-Segura, R. Rodriguez-Sotres, C. Mujica-Jimenez, R. A. Munoz-Clares
The Structural Bases Of The Dual Coenzyme Specificity Of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
To Be Published
[
close entry info
]
Hetero Components
(5, 61)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
4a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
4b: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4b)
5a: [[(2R,3S,4R,5R)-5-[(3R)-3-AMINOCAR... (TXEa)
5b: [[(2R,3S,4R,5R)-5-[(3R)-3-AMINOCAR... (TXEb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
35
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
16
Ligand/Ion
GLYCEROL
3
K
6
Ligand/Ion
POTASSIUM ION
4
PE4
2
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5
TXE
2
Ligand/Ion
[[(2R,3S,4R,5R)-5-[(3R)-3-AMINOCARBONYL-3,4-DIHYDRO-2H-PYRIDIN-1-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANIDYL-PHOSPHORYL] [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL PHOSPHATE
[
close Hetero Component info
]
Sites
(58, 58)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:70 , ARG A:74 , ASP A:77
BINDING SITE FOR RESIDUE EDO A1491
02
AC2
SOFTWARE
PHE A:331 , ARG A:357 , EDO A:1494 , ASP B:264 , ALA B:265 , EDO B:1494
BINDING SITE FOR RESIDUE EDO A1492
03
AC3
SOFTWARE
ARG B:14 , VAL B:16 , GLU B:17 , ARG B:48
BINDING SITE FOR RESIDUE EDO B1491
04
AC4
SOFTWARE
GLU B:446 , PRO B:448 , EDO B:1495 , PE4 B:1505 , GOL B:1512 , HOH B:2065
BINDING SITE FOR RESIDUE EDO B1492
05
AC5
SOFTWARE
ARG B:140 , ALA B:169 , HOH B:2042
BINDING SITE FOR RESIDUE EDO B1493
06
AC6
SOFTWARE
MET A:276 , GLY A:445 , PE4 A:1511 , HOH A:2191
BINDING SITE FOR RESIDUE EDO A1493
07
AC7
SOFTWARE
PHE A:331 , PRO A:332 , GLU A:335 , EDO A:1492 , SER B:297 , ARG B:301
BINDING SITE FOR RESIDUE EDO A1494
08
AC8
SOFTWARE
EDO A:1492 , ASP B:266 , LEU B:267 , ASP B:268 , ARG B:301 , LYS B:305
BINDING SITE FOR RESIDUE EDO B1494
09
AC9
SOFTWARE
THR B:108 , SER B:447 , EDO B:1492 , PE4 B:1505 , K B:1508 , GOL B:1511
BINDING SITE FOR RESIDUE EDO B1495
10
BC1
SOFTWARE
ILE A:123 , ARG A:140 , PRO A:142 , ALA A:169 , HOH A:2112
BINDING SITE FOR RESIDUE EDO A1495
11
BC2
SOFTWARE
ASP A:360 , GLY A:361 , ALA A:362
BINDING SITE FOR RESIDUE EDO A1496
12
BC3
SOFTWARE
GLN B:7 , LYS B:187
BINDING SITE FOR RESIDUE EDO B1496
13
BC4
SOFTWARE
ARG B:131 , THR B:133 , GLU B:482 , ASP B:485
BINDING SITE FOR RESIDUE EDO B1497
14
BC5
SOFTWARE
ALA B:300 , GLU B:303
BINDING SITE FOR RESIDUE EDO B1498
15
BC6
SOFTWARE
ARG A:43 , TRP A:215 , HOH A:2051
BINDING SITE FOR RESIDUE EDO A1497
16
BC7
SOFTWARE
GLU A:126 , HOH A:2114
BINDING SITE FOR RESIDUE EDO A1498
17
BC8
SOFTWARE
ASP A:423 , ARG A:426
BINDING SITE FOR RESIDUE EDO A1499
18
BC9
SOFTWARE
ASN B:409 , ARG B:433
BINDING SITE FOR RESIDUE EDO B1499
19
CC1
SOFTWARE
EDO A:1501
BINDING SITE FOR RESIDUE EDO A1527
20
CC2
SOFTWARE
GLU A:303 , ARG A:350 , EDO A:1527
BINDING SITE FOR RESIDUE EDO A1501
21
CC3
SOFTWARE
TYR B:413 , GLN B:458 , HOH B:2115 , HOH B:2163 , HOH B:2198
BINDING SITE FOR RESIDUE EDO B1500
22
CC4
SOFTWARE
PHE B:262 , GLU B:401 , ASP B:402 , ARG B:433
BINDING SITE FOR RESIDUE EDO B1501
23
CC5
SOFTWARE
ARG A:301 , ASP A:317 , ASP A:320
BINDING SITE FOR RESIDUE EDO A1502
24
CC6
SOFTWARE
ASN A:31 , ASP A:317 , EDO A:1504 , GOL A:1524
BINDING SITE FOR RESIDUE EDO A1503
25
CC7
SOFTWARE
ALA A:265 , LEU A:267 , ARG A:301 , ASP A:317 , GLN A:319 , EDO A:1503
BINDING SITE FOR RESIDUE EDO A1504
26
CC8
SOFTWARE
ASP B:266 , HOH B:2135
BINDING SITE FOR RESIDUE EDO B1502
27
CC9
SOFTWARE
GLU A:248 , GLY A:455 , GLY A:462 , ARG A:463 , ARG A:475 , HOH A:2276 , HOH A:2278
BINDING SITE FOR RESIDUE EDO A1505
28
DC1
SOFTWARE
ALA A:65 , VAL A:120 , PRO A:121 , ILE A:123 , GOL A:1522 , PRO B:129 , GLU B:450
BINDING SITE FOR RESIDUE EDO A1506
29
DC2
SOFTWARE
ARG A:139 , HIS A:432 , GOL A:1522 , HOH A:2257 , HOH A:2291 , PRO B:129 , HOH B:2077
BINDING SITE FOR RESIDUE EDO A1507
30
DC3
SOFTWARE
ASP A:379 , ASP A:380 , ARG A:385 , ASP A:410
BINDING SITE FOR RESIDUE EDO A1508
31
DC4
SOFTWARE
GLU A:401 , ILE A:405 , ARG A:426 , ARG A:433
BINDING SITE FOR RESIDUE EDO A1509
32
DC5
SOFTWARE
ALA A:265 , ASP A:266 , THR A:421 , GLN A:422 , ASN A:442
BINDING SITE FOR RESIDUE EDO A1510
33
DC6
SOFTWARE
GLU B:252 , GOL B:1511 , TXE B:1514
BINDING SITE FOR RESIDUE EDO B1504
34
DC7
SOFTWARE
SER B:103 , MET B:276 , TRP B:444 , GLU B:446 , VAL B:489 , EDO B:1492 , EDO B:1495 , K B:1508
BINDING SITE FOR RESIDUE PE4 B1505
35
DC8
SOFTWARE
VAL A:104 , GLU A:446 , EDO A:1493 , K A:1514
BINDING SITE FOR RESIDUE PE4 A1511
36
DC9
SOFTWARE
THR A:26 , ILE A:27 , ASP A:93 , VAL A:180 , HOH A:2039
BINDING SITE FOR RESIDUE K A1512
37
EC1
SOFTWARE
THR B:26 , ILE B:27 , ASP B:93 , VAL B:180 , HOH B:2018
BINDING SITE FOR RESIDUE K B1506
38
EC2
SOFTWARE
GLU A:223 , LEU A:246 , GLU A:248 , LYS A:457 , GLY A:460
BINDING SITE FOR RESIDUE K A1513
39
EC3
SOFTWARE
GLU B:223 , LEU B:246 , GLU B:248 , LYS B:457 , GLY B:460
BINDING SITE FOR RESIDUE K B1507
40
EC4
SOFTWARE
PE4 A:1511
BINDING SITE FOR RESIDUE K A1514
41
EC5
SOFTWARE
EDO B:1495 , PE4 B:1505
BINDING SITE FOR RESIDUE K B1508
42
EC6
SOFTWARE
LEU A:315 , ASP A:317 , ASP A:320 , ASN A:322 , THR A:323 , HOH A:2205
BINDING SITE FOR RESIDUE GOL A1516
43
EC7
SOFTWARE
ARG A:378 , ASP A:380
BINDING SITE FOR RESIDUE GOL A1517
44
EC8
SOFTWARE
HOH B:2200
BINDING SITE FOR RESIDUE GOL B1509
45
EC9
SOFTWARE
GLU B:5 , GLU B:6 , GLN B:7 , LYS B:8 , TYR B:15
BINDING SITE FOR RESIDUE GOL B1510
46
FC1
SOFTWARE
GLU A:5 , GLU A:6 , GLN A:7 , LYS A:8 , TYR A:15 , GOL A:1519 , HOH A:2143
BINDING SITE FOR RESIDUE GOL A1518
47
FC2
SOFTWARE
PHE A:4 , GLN A:7 , LYS A:187 , GOL A:1518 , HOH A:2012
BINDING SITE FOR RESIDUE GOL A1519
48
FC3
SOFTWARE
ARG A:139 , GLU A:141 , HIS A:432 , LEU A:434 , LYS A:477
BINDING SITE FOR RESIDUE GOL A1520
49
FC4
SOFTWARE
ASP A:199
BINDING SITE FOR RESIDUE GOL A1521
50
FC5
SOFTWARE
ALA A:61 , MET A:63 , ALA A:65 , ARG A:68 , EDO A:1506 , EDO A:1507 , ARG B:131
BINDING SITE FOR RESIDUE GOL A1522
51
FC6
SOFTWARE
GLN B:157 , EDO B:1495 , EDO B:1504 , HOH B:2090
BINDING SITE FOR RESIDUE GOL B1511
52
FC7
SOFTWARE
TRP A:161 , GLU A:252 , LEU A:415 , GLU A:464 , GOL A:1525 , TXE A:1526 , HOH A:2266
BINDING SITE FOR RESIDUE GOL A1523
53
FC8
SOFTWARE
HOH A:2071 , ASP B:111 , PRO B:448 , ALA B:449 , GLU B:450 , EDO B:1492 , HOH B:2065
BINDING SITE FOR RESIDUE GOL B1512
54
FC9
SOFTWARE
ALA B:30 , ASP B:317 , PHE B:363 , TYR B:368
BINDING SITE FOR RESIDUE GOL B1513
55
GC1
SOFTWARE
ALA A:30 , ASP A:317 , ALA A:362 , PHE A:363 , TYR A:368 , EDO A:1503
BINDING SITE FOR RESIDUE GOL A1524
56
GC2
SOFTWARE
TYR A:154 , GLN A:157 , TRP A:161 , GOL A:1523 , HOH A:2134 , HOH A:2294
BINDING SITE FOR RESIDUE GOL A1525
57
GC3
SOFTWARE
ILE A:149 , GLY A:150 , ALA A:151 , TRP A:152 , ASN A:153 , LYS A:176 , SER A:178 , GLU A:179 , GLY A:209 , GLY A:213 , GLN A:214 , PHE A:227 , THR A:228 , GLY A:229 , GLY A:230 , THR A:233 , VAL A:237 , GLU A:252 , LEU A:253 , GLY A:254 , CYS A:286 , GLU A:387 , PHE A:389 , GOL A:1523 , HOH A:2134 , HOH A:2140 , HOH A:2157 , HOH A:2295
BINDING SITE FOR RESIDUE TXD A1526
58
GC4
SOFTWARE
ILE B:149 , GLY B:150 , ALA B:151 , TRP B:152 , ASN B:153 , LYS B:176 , SER B:178 , GLU B:179 , GLY B:209 , GLY B:213 , GLN B:214 , PHE B:227 , THR B:228 , GLY B:229 , GLY B:230 , THR B:233 , VAL B:237 , GLU B:252 , LEU B:253 , GLY B:254 , CYS B:286 , GLU B:387 , PHE B:389 , EDO B:1504 , HOH B:2095
BINDING SITE FOR RESIDUE TXD B1514
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:251-258,B:251-258)
2: ALDEHYDE_DEHYDR_CYS (A:279-290,B:279-290)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
BETB_PSEAE
251-258
2
A:251-258
B:251-258
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
BETB_PSEAE
279-290
2
A:279-290
B:279-290
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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