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4CAJ
Biol. Unit 2
Info
Asym.Unit (211 KB)
Biol.Unit 1 (101 KB)
Biol.Unit 2 (101 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC STRUCTURE OF THE MOUSE SIGN-R1 CRD DOMAIN IN COMPLEX WITH SIALIC ACID
Authors
:
N. Silva-Martin, S. G. Bartual, J. A. Hermoso
Date
:
08 Oct 13 (Deposition) - 15 Oct 14 (Release) - 22 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
C-Lectin Crd, Sign-R1, Immune System, Capsular Polysaccharide,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Silva-Martin, S. G. Bartual, A. Rodriguez, E. Ramirez, P. Chacon, R. M. Anthony, C. G. Park, J. A. Hermoso
Structural Basis For Selective Recognition Of Endogenous And Microbial Polysaccharides By Macrophage Receptor Sign-R1
Structure V. 22 1595 2014
[
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: O-SIALIC ACID (SIAa)
3b: O-SIALIC ACID (SIAb)
3c: O-SIALIC ACID (SIAc)
4a: SULFATE ION (SO4a)
4aa: SULFATE ION (SO4aa)
4ab: SULFATE ION (SO4ab)
4ac: SULFATE ION (SO4ac)
4ad: SULFATE ION (SO4ad)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
4w: SULFATE ION (SO4w)
4x: SULFATE ION (SO4x)
4y: SULFATE ION (SO4y)
4z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
SIA
1
Ligand/Ion
O-SIALIC ACID
4
SO4
14
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(22, 22)
Info
All Sites
01: AC6 (SOFTWARE)
02: BC5 (SOFTWARE)
03: BC9 (SOFTWARE)
04: CC3 (SOFTWARE)
05: CC4 (SOFTWARE)
06: CC5 (SOFTWARE)
07: CC6 (SOFTWARE)
08: CC7 (SOFTWARE)
09: CC8 (SOFTWARE)
10: CC9 (SOFTWARE)
11: DC1 (SOFTWARE)
12: DC2 (SOFTWARE)
13: DC3 (SOFTWARE)
14: DC4 (SOFTWARE)
15: DC5 (SOFTWARE)
16: DC6 (SOFTWARE)
17: DC7 (SOFTWARE)
18: DC8 (SOFTWARE)
19: DC9 (SOFTWARE)
20: EC1 (SOFTWARE)
21: EC2 (SOFTWARE)
22: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
ARG A:193 , PRO A:196 , TRP A:197 , PRO C:196 , TRP C:197
BINDING SITE FOR RESIDUE CL A1328
02
BC5
SOFTWARE
ASN B:205 , ASN B:234 , LYS B:316 , HOH B:2014 , SO4 D:1325
BINDING SITE FOR RESIDUE SO4 B1327
03
BC9
SOFTWARE
SER B:271 , THR B:272 , HOH B:2118 , LYS C:247
BINDING SITE FOR RESIDUE SO4 B1330
04
CC3
SOFTWARE
LYS D:261 , GLU D:262
BINDING SITE FOR RESIDUE SO4 B1334
05
CC4
SOFTWARE
GLU C:285 , ASN C:287 , GLU C:292 , ASP C:304 , SIA C:1328
BINDING SITE FOR RESIDUE CA C1323
06
CC5
SOFTWARE
GLU C:296 , SER C:305 , LYS C:311 , HOH C:2093 , HOH C:2094 , HOH C:2095 , HOH C:2107
BINDING SITE FOR RESIDUE SO4 C1324
07
CC6
SOFTWARE
LYS C:317 , SER C:318
BINDING SITE FOR RESIDUE SO4 C1325
08
CC7
SOFTWARE
LYS C:310
BINDING SITE FOR RESIDUE SO4 C1326
09
CC8
SOFTWARE
ARG C:193 , LEU C:194 , CYS C:195 , HOH C:2005 , HOH C:2014 , LYS D:211 , LYS D:249
BINDING SITE FOR RESIDUE SO4 C1327
10
CC9
SOFTWARE
GLU C:285 , ASN C:287 , ASN C:288 , GLU C:292 , CA C:1323 , HOH C:2107 , HOH C:2109
BINDING SITE FOR RESIDUE SIA C1328
11
DC1
SOFTWARE
ASN C:288
BINDING SITE FOR RESIDUE CL C1329
12
DC2
SOFTWARE
THR C:272 , HOH C:2074 , HOH C:2110
BINDING SITE FOR RESIDUE SO4 C1330
13
DC3
SOFTWARE
SER C:275 , HOH C:2111
BINDING SITE FOR RESIDUE SO4 C1331
14
DC4
SOFTWARE
LYS C:260 , LYS C:261 , GLU C:262
BINDING SITE FOR RESIDUE SO4 C1332
15
DC5
SOFTWARE
ASN C:205 , ASN C:234 , LYS C:316 , HOH C:2038 , HOH C:2113
BINDING SITE FOR RESIDUE SO4 C1333
16
DC6
SOFTWARE
GLU D:285 , ASN D:287 , GLU D:292 , ASP D:304 , HOH D:2083
BINDING SITE FOR RESIDUE CA D1323
17
DC7
SOFTWARE
GLU D:296 , SER D:305 , LEU D:309 , LYS D:311 , HOH D:2091 , HOH D:2092 , HOH D:2093
BINDING SITE FOR RESIDUE SO4 D1324
18
DC8
SOFTWARE
SO4 B:1327 , HOH B:2013 , ASN D:205 , ASN D:234 , LYS D:316 , HOH D:2013 , HOH D:2039
BINDING SITE FOR RESIDUE SO4 D1325
19
DC9
SOFTWARE
LYS D:310
BINDING SITE FOR RESIDUE SO4 D1326
20
EC1
SOFTWARE
SER D:275
BINDING SITE FOR RESIDUE SO4 D1327
21
EC2
SOFTWARE
LYS A:247 , SER D:271 , THR D:272 , HOH D:2069
BINDING SITE FOR RESIDUE SO4 D1328
22
EC3
SOFTWARE
LYS C:211 , LYS C:249 , HOH C:2009 , ARG D:193 , LEU D:194 , CYS D:195
BINDING SITE FOR RESIDUE SO4 D1329
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (C:202-316,D:202-316)
2: C_TYPE_LECTIN_1 (C:294-315,D:294-315)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
C209B_MOUSE
202-316
2
-
-
C:202-316
D:202-316
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
C209B_MOUSE
294-315
2
-
-
C:294-315
D:294-315
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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show bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (211 KB)
Header - Asym.Unit
Biol.Unit 1 (101 KB)
Header - Biol.Unit 1
Biol.Unit 2 (101 KB)
Header - Biol.Unit 2
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