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4CAJ
Asym. Unit
Info
Asym.Unit (211 KB)
Biol.Unit 1 (101 KB)
Biol.Unit 2 (101 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC STRUCTURE OF THE MOUSE SIGN-R1 CRD DOMAIN IN COMPLEX WITH SIALIC ACID
Authors
:
N. Silva-Martin, S. G. Bartual, J. A. Hermoso
Date
:
08 Oct 13 (Deposition) - 15 Oct 14 (Release) - 22 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
C-Lectin Crd, Sign-R1, Immune System, Capsular Polysaccharide,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Silva-Martin, S. G. Bartual, A. Rodriguez, E. Ramirez, P. Chacon, R. M. Anthony, C. G. Park, J. A. Hermoso
Structural Basis For Selective Recognition Of Endogenous And Microbial Polysaccharides By Macrophage Receptor Sign-R1
Structure V. 22 1595 2014
[
close entry info
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Hetero Components
(4, 39)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: O-SIALIC ACID (SIAa)
3b: O-SIALIC ACID (SIAb)
3c: O-SIALIC ACID (SIAc)
4a: SULFATE ION (SO4a)
4aa: SULFATE ION (SO4aa)
4ab: SULFATE ION (SO4ab)
4ac: SULFATE ION (SO4ac)
4ad: SULFATE ION (SO4ad)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
4w: SULFATE ION (SO4w)
4x: SULFATE ION (SO4x)
4y: SULFATE ION (SO4y)
4z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
SIA
3
Ligand/Ion
O-SIALIC ACID
4
SO4
30
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:285 , ASN A:287 , GLU A:292 , ASP A:304 , HOH A:2077
BINDING SITE FOR RESIDUE CA A1323
02
AC2
SOFTWARE
GLU A:296 , SER A:305 , LEU A:309 , LYS A:311 , HOH A:2083
BINDING SITE FOR RESIDUE SO4 A1324
03
AC3
SOFTWARE
LYS A:317 , SER A:318 , HOH A:2099
BINDING SITE FOR RESIDUE SO4 A1325
04
AC4
SOFTWARE
LEU A:309 , LYS A:310 , HOH A:2090 , HOH A:2100
BINDING SITE FOR RESIDUE SO4 A1326
05
AC5
SOFTWARE
LYS A:279 , ASN A:287 , ASN A:288 , ILE A:289
BINDING SITE FOR RESIDUE SIA A1327
06
AC6
SOFTWARE
ARG A:193 , PRO A:196 , TRP A:197 , PRO C:196 , TRP C:197
BINDING SITE FOR RESIDUE CL A1328
07
AC7
SOFTWARE
SER A:271 , THR A:272
BINDING SITE FOR RESIDUE SO4 A1329
08
AC8
SOFTWARE
SER A:274 , SER A:275
BINDING SITE FOR RESIDUE SO4 A1330
09
AC9
SOFTWARE
ASN A:205 , ASN A:234 , LYS A:316
BINDING SITE FOR RESIDUE SO4 A1331
10
BC1
SOFTWARE
SER A:235 , ASP A:236 , GLU A:237 , ARG A:276
BINDING SITE FOR RESIDUE SO4 A1332
11
BC2
SOFTWARE
LYS A:211 , LYS A:249 , HOH A:2009 , CYS B:192 , ARG B:193 , LEU B:194 , CYS B:195
BINDING SITE FOR RESIDUE SO4 B1324
12
BC3
SOFTWARE
GLU B:285 , ASN B:287 , GLU B:292 , ASP B:304 , SIA B:1329
BINDING SITE FOR RESIDUE CA B1325
13
BC4
SOFTWARE
GLU B:296 , LEU B:309 , LYS B:311 , HOH B:2101
BINDING SITE FOR RESIDUE SO4 B1326
14
BC5
SOFTWARE
ASN B:205 , ASN B:234 , LYS B:316 , HOH B:2014 , SO4 D:1325
BINDING SITE FOR RESIDUE SO4 B1327
15
BC6
SOFTWARE
ARG A:193 , LEU A:194 , CYS A:195 , HOH A:2015 , LYS B:211 , LYS B:249
BINDING SITE FOR RESIDUE SO4 A1333
16
BC7
SOFTWARE
LYS B:310 , HOH B:2021
BINDING SITE FOR RESIDUE SO4 B1328
17
BC8
SOFTWARE
GLU B:285 , ASN B:287 , ASN B:288 , GLU B:292 , CA B:1325 , HOH B:2112 , HOH B:2115
BINDING SITE FOR RESIDUE SIA B1329
18
BC9
SOFTWARE
SER B:271 , THR B:272 , HOH B:2118 , LYS C:247
BINDING SITE FOR RESIDUE SO4 B1330
19
CC1
SOFTWARE
SER B:274 , SER B:275
BINDING SITE FOR RESIDUE SO4 B1331
20
CC2
SOFTWARE
LYS B:261 , GLU B:262 , HOH B:2120 , HOH B:2121
BINDING SITE FOR RESIDUE SO4 B1332
21
CC3
SOFTWARE
LYS D:261 , GLU D:262
BINDING SITE FOR RESIDUE SO4 B1334
22
CC4
SOFTWARE
GLU C:285 , ASN C:287 , GLU C:292 , ASP C:304 , SIA C:1328
BINDING SITE FOR RESIDUE CA C1323
23
CC5
SOFTWARE
GLU C:296 , SER C:305 , LYS C:311 , HOH C:2093 , HOH C:2094 , HOH C:2095 , HOH C:2107
BINDING SITE FOR RESIDUE SO4 C1324
24
CC6
SOFTWARE
LYS C:317 , SER C:318
BINDING SITE FOR RESIDUE SO4 C1325
25
CC7
SOFTWARE
LYS C:310
BINDING SITE FOR RESIDUE SO4 C1326
26
CC8
SOFTWARE
ARG C:193 , LEU C:194 , CYS C:195 , HOH C:2005 , HOH C:2014 , LYS D:211 , LYS D:249
BINDING SITE FOR RESIDUE SO4 C1327
27
CC9
SOFTWARE
GLU C:285 , ASN C:287 , ASN C:288 , GLU C:292 , CA C:1323 , HOH C:2107 , HOH C:2109
BINDING SITE FOR RESIDUE SIA C1328
28
DC1
SOFTWARE
ASN C:288
BINDING SITE FOR RESIDUE CL C1329
29
DC2
SOFTWARE
THR C:272 , HOH C:2074 , HOH C:2110
BINDING SITE FOR RESIDUE SO4 C1330
30
DC3
SOFTWARE
SER C:275 , HOH C:2111
BINDING SITE FOR RESIDUE SO4 C1331
31
DC4
SOFTWARE
LYS C:260 , LYS C:261 , GLU C:262
BINDING SITE FOR RESIDUE SO4 C1332
32
DC5
SOFTWARE
ASN C:205 , ASN C:234 , LYS C:316 , HOH C:2038 , HOH C:2113
BINDING SITE FOR RESIDUE SO4 C1333
33
DC6
SOFTWARE
GLU D:285 , ASN D:287 , GLU D:292 , ASP D:304 , HOH D:2083
BINDING SITE FOR RESIDUE CA D1323
34
DC7
SOFTWARE
GLU D:296 , SER D:305 , LEU D:309 , LYS D:311 , HOH D:2091 , HOH D:2092 , HOH D:2093
BINDING SITE FOR RESIDUE SO4 D1324
35
DC8
SOFTWARE
SO4 B:1327 , HOH B:2013 , ASN D:205 , ASN D:234 , LYS D:316 , HOH D:2013 , HOH D:2039
BINDING SITE FOR RESIDUE SO4 D1325
36
DC9
SOFTWARE
LYS D:310
BINDING SITE FOR RESIDUE SO4 D1326
37
EC1
SOFTWARE
SER D:275
BINDING SITE FOR RESIDUE SO4 D1327
38
EC2
SOFTWARE
LYS A:247 , SER D:271 , THR D:272 , HOH D:2069
BINDING SITE FOR RESIDUE SO4 D1328
39
EC3
SOFTWARE
LYS C:211 , LYS C:249 , HOH C:2009 , ARG D:193 , LEU D:194 , CYS D:195
BINDING SITE FOR RESIDUE SO4 D1329
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:202-316,B:202-316,C:202-316,D:20...)
2: C_TYPE_LECTIN_1 (A:294-315,B:294-315,C:294-315,D:29...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
C209B_MOUSE
202-316
4
A:202-316
B:202-316
C:202-316
D:202-316
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
C209B_MOUSE
294-315
4
A:294-315
B:294-315
C:294-315
D:294-315
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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