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4CAF
Asym. Unit
Info
Asym.Unit (247 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (84 KB)
Biol.Unit 3 (82 KB)
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(1)
Title
:
PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE IN COMPLEX WITH A BENZOTHIOPHENE INHIBITOR (COMPOUND 34A)
Authors
:
M. D. Rackham, J. A. Brannigan, K. Rangachari, A. J. Wilkinson, A. A. Hol E. W. Tate, R. J. Leatherbarrow
Date
:
08 Oct 13 (Deposition) - 02 Apr 14 (Release) - 09 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Transferase, Myristoylation, Malaria, Inhibitor, Benzothiophene
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. D. Rackham, J. A. Brannigan, K. Rangachari, S. Meister, A. J. Wilkinson, A. A. Holder, R. J. Leatherbarrow, E. W. Tate
Design And Synthesis Of High Affinity Inhibitors Of Plasmodium Falciparum And Plasmodium Vivax N- Myristoyltransferases Directed By Ligand Efficiency Dependent Lipophilicity (Lelp).
J. Med. Chem. V. 57 2773 2014
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Hetero Components
(7, 21)
Info
All Hetero Components
1a: 4-[(2-{5-[(3,5-DIMETHYL-1H-PYRAZOL... (370a)
1b: 4-[(2-{5-[(3,5-DIMETHYL-1H-PYRAZOL... (370b)
1c: 4-[(2-{5-[(3,5-DIMETHYL-1H-PYRAZOL... (370c)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: DIMETHYL SULFOXIDE (DMSa)
3b: DIMETHYL SULFOXIDE (DMSb)
3c: DIMETHYL SULFOXIDE (DMSc)
3d: DIMETHYL SULFOXIDE (DMSd)
3e: DIMETHYL SULFOXIDE (DMSe)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
5a: AMMONIUM ION (NH4a)
5b: AMMONIUM ION (NH4b)
5c: AMMONIUM ION (NH4c)
6a: 2-OXOPENTADECYL-COA (NHWa)
6b: 2-OXOPENTADECYL-COA (NHWb)
6c: 2-OXOPENTADECYL-COA (NHWc)
7a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
370
3
Ligand/Ion
4-[(2-{5-[(3,5-DIMETHYL-1H-PYRAZOL-4-YL)METHYL]-1,3,4-OXADIAZOL-2-YL}-1-BENZOTHIOPHEN-3-YL)OXY]PIPERIDINE
2
CL
3
Ligand/Ion
CHLORIDE ION
3
DMS
5
Ligand/Ion
DIMETHYL SULFOXIDE
4
MG
3
Ligand/Ion
MAGNESIUM ION
5
NH4
3
Ligand/Ion
AMMONIUM ION
6
NHW
3
Ligand/Ion
2-OXOPENTADECYL-COA
7
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:28 , LYS A:29 , PHE A:30 , TRP A:31 , ASN A:94 , TYR A:95 , VAL A:96 , ASN A:161 , PHE A:162 , LEU A:163 , CYS A:164 , VAL A:165 , ARG A:170 , SER A:171 , LYS A:172 , ARG A:173 , LEU A:174 , ALA A:175 , PRO A:176 , THR A:183 , ILE A:186 , ASN A:187 , TRP A:192 , GLN A:193 , ALA A:194 , THR A:197 , LEU A:202 , TYR A:393 , MG A:1415 , HOH A:2001 , HOH A:2002 , HOH A:2279 , HOH A:2287 , HOH A:2524 , HOH A:2525 , HOH A:2526 , HOH A:2527 , HOH A:2528 , HOH A:2529
BINDING SITE FOR RESIDUE NHW A1422
02
AC2
SOFTWARE
TYR B:28 , LYS B:29 , PHE B:30 , TRP B:31 , ASN B:94 , TYR B:95 , VAL B:96 , ASN B:161 , PHE B:162 , LEU B:163 , CYS B:164 , VAL B:165 , ARG B:170 , SER B:171 , LYS B:172 , ARG B:173 , LEU B:174 , ALA B:175 , PRO B:176 , THR B:183 , ILE B:186 , ASN B:187 , TRP B:192 , GLN B:193 , TYR B:196 , THR B:197 , LEU B:202 , TYR B:393 , MG B:1414 , HOH B:2002 , HOH B:2003 , HOH B:2244 , HOH B:2250 , HOH B:2251 , HOH B:2484 , HOH B:2485 , HOH B:2486 , HOH B:2487 , HOH B:2488 , HOH B:2489
BINDING SITE FOR RESIDUE NHW B1422
03
AC3
SOFTWARE
TYR C:28 , LYS C:29 , PHE C:30 , TRP C:31 , ASN C:94 , TYR C:95 , VAL C:96 , ASN C:161 , PHE C:162 , LEU C:163 , CYS C:164 , VAL C:165 , ARG C:170 , SER C:171 , LYS C:172 , ARG C:173 , LEU C:174 , ALA C:175 , PRO C:176 , THR C:183 , ILE C:186 , TRP C:192 , ALA C:194 , TYR C:196 , THR C:197 , LEU C:202 , TYR C:393 , MG C:1413 , HOH C:2002 , HOH C:2225 , HOH C:2230 , HOH C:2231 , HOH C:2422 , HOH C:2423 , HOH C:2425 , HOH C:2426 , HOH C:2427
BINDING SITE FOR RESIDUE NHW C1422
04
AC4
SOFTWARE
ASP A:98 , PHE A:105 , TYR A:107 , THR A:197 , TYR A:211 , HIS A:213 , TYR A:315 , SER A:319 , TYR A:334 , SER A:335 , ASN A:365 , ALA A:366 , LEU A:367 , LEU A:388 , VAL A:408 , LEU A:409 , LEU A:410 , NH4 A:1416 , HOH A:2306 , HOH A:2457 , HOH A:2521
BINDING SITE FOR RESIDUE 370 A1411
05
AC5
SOFTWARE
ASP B:98 , PHE B:105 , TYR B:107 , THR B:197 , TYR B:211 , HIS B:213 , TYR B:315 , SER B:319 , TYR B:334 , SER B:335 , ASN B:365 , ALA B:366 , LEU B:367 , LEU B:388 , LEU B:409 , LEU B:410 , NH4 B:1415 , HOH B:2268 , HOH B:2424 , HOH B:2483
BINDING SITE FOR RESIDUE 370 B1411
06
AC6
SOFTWARE
ASP C:98 , PHE C:105 , TYR C:107 , THR C:197 , TYR C:211 , HIS C:213 , TYR C:315 , SER C:319 , TYR C:334 , SER C:335 , ASN C:365 , ALA C:366 , LEU C:367 , VAL C:408 , LEU C:409 , LEU C:410 , NH4 C:1414 , HOH C:2245 , HOH C:2368 , HOH C:2421
BINDING SITE FOR RESIDUE 370 C1411
07
AC7
SOFTWARE
GLU B:159 , PHE B:281 , TRP B:289 , HOH B:2427
BINDING SITE FOR RESIDUE DMS B1412
08
AC8
SOFTWARE
ASN A:295 , TYR A:298 , SER A:316 , ASN A:331 , ASN A:359
BINDING SITE FOR RESIDUE DMS A1412
09
AC9
SOFTWARE
ASN B:295 , TYR B:298 , SER B:316 , ASN B:331 , ASN B:359 , PHE B:361
BINDING SITE FOR RESIDUE DMS B1413
10
BC1
SOFTWARE
GLU A:159 , PHE A:281 , TRP A:289 , HOH A:2460
BINDING SITE FOR RESIDUE DMS A1413
11
BC2
SOFTWARE
GLU C:159 , PHE C:281 , TRP C:289 , HOH C:2371
BINDING SITE FOR RESIDUE DMS C1412
12
BC3
SOFTWARE
ARG A:210 , LYS A:373 , HOH A:2522 , ARG B:210 , LYS B:373
BINDING SITE FOR RESIDUE SO4 A1414
13
BC4
SOFTWARE
LEU C:169 , SER C:171 , LYS C:172 , ARG C:173 , LEU C:174 , NHW C:1422
BINDING SITE FOR RESIDUE MG C1413
14
BC5
SOFTWARE
LEU B:169 , SER B:171 , LYS B:172 , ARG B:173 , LEU B:174 , NHW B:1422
BINDING SITE FOR RESIDUE MG B1414
15
BC6
SOFTWARE
LEU A:169 , SER A:171 , LYS A:172 , ARG A:173 , LEU A:174 , NHW A:1422
BINDING SITE FOR RESIDUE MG A1415
16
BC7
SOFTWARE
ASN B:161 , THR B:197 , LEU B:410 , 370 B:1411 , HOH B:2235
BINDING SITE FOR RESIDUE NH4 B1415
17
BC8
SOFTWARE
ASN C:161 , THR C:197 , LEU C:410 , 370 C:1411 , HOH C:2213
BINDING SITE FOR RESIDUE NH4 C1414
18
BC9
SOFTWARE
ASN A:161 , THR A:197 , LEU A:410 , 370 A:1411 , HOH A:2266
BINDING SITE FOR RESIDUE NH4 A1416
19
CC1
SOFTWARE
LYS A:180 , THR A:247 , LEU A:248 , ARG A:358
BINDING SITE FOR RESIDUE CL A1417
20
CC2
SOFTWARE
LYS C:180 , THR C:247 , LEU C:248 , ARG C:358
BINDING SITE FOR RESIDUE CL C1415
21
CC3
SOFTWARE
LYS B:180 , THR B:247 , LEU B:248 , ARG B:358 , HOH B:2340
BINDING SITE FOR RESIDUE CL B1416
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4cafa1 (A:27-210)
1b: SCOP_d4cafb1 (B:27-210)
1c: SCOP_d4cafc1 (C:27-210)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Acyl-CoA N-acyltransferases (Nat)
(250)
Superfamily
:
Acyl-CoA N-acyltransferases (Nat)
(250)
Family
:
automated matches
(63)
Protein domain
:
automated matches
(63)
Plasmodium vivax [TaxId: 5855]
(6)
1a
d4cafa1
A:27-210
1b
d4cafb1
B:27-210
1c
d4cafc1
C:27-210
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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