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4C9X
Biol. Unit 1
Info
Asym.Unit (73 KB)
Biol.Unit 1 (134 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NUDT1 (MTH1) WITH S-CRIZOTINIB
Authors
:
J. M. Elkins, E. Salah, M. Vollmar, K. Huber, G. Superti-Furga, K. R. Abd T. Krojer, F. Von Delft, C. Bountra, A. Edwards, S. Knapp
Date
:
03 Oct 13 (Deposition) - 02 Apr 14 (Release) - 16 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase, Crizotinib
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. V. M. Huber, E. Salah, B. Radic, M. Gridling, J. M. Elkins, A. Stukalov, A. Jemth, C. Gokturk, K. Sanjiv, K. Stromberg, T. Pham, U. W. Berglund, J. Colinge, K. L. Bennett, J. I. Loizou, T. Helleday, S. Knapp, G. Superti-Furga
Stereospecific Targeting Of Mth1 By (S)-Crizotinib As An Anticancer Strategy.
Nature V. 508 222 2014
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
3a: 3-[(1S)-1-(2,6-DICHLORO-3-FLUOROPH... (VHSa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
SO4
10
Ligand/Ion
SULFATE ION
3
VHS
2
Ligand/Ion
3-[(1S)-1-(2,6-DICHLORO-3-FLUOROPHENYL)ETHOXY]-5-(1-PIPERIDIN-4-YLPYRAZOL-4-YL)PYRIDIN-2-AMINE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:7 , PHE A:27 , PHE A:72 , PHE A:74 , GLU A:77 , MET A:81 , VAL A:83 , TRP A:117 , ASP A:119 , ASP A:120 , CL A:1158 , HOH A:2172
BINDING SITE FOR RESIDUE VHS A1157
2
AC2
SOFTWARE
ASN A:33 , GLY A:34 , ASP A:120 , VHS A:1157 , HOH A:2172
BINDING SITE FOR RESIDUE CL A1158
3
AC3
SOFTWARE
HIS A:134 , ARG A:151 , HOH A:2036 , HOH A:2227
BINDING SITE FOR RESIDUE SO4 A1159
4
AC4
SOFTWARE
HIS A:65 , THR A:88 , ASP A:89 , SER A:90 , HOH A:2139
BINDING SITE FOR RESIDUE SO4 A1160
5
AC5
SOFTWARE
LYS A:138 , LEU A:146 , ASP A:147 , HOH A:2149 , HOH A:2150 , HOH A:2228
BINDING SITE FOR RESIDUE SO4 A1161
6
AC6
SOFTWARE
HIS A:65 , LYS A:66 , HOH A:2079 , HOH A:2114 , HOH A:2115 , HOH A:2118
BINDING SITE FOR RESIDUE SO4 A1162
7
AC7
SOFTWARE
PRO A:95 , ARG A:151 , VAL A:153 , ASP A:154 , THR A:155 , HOH A:2145 , HOH A:2156 , HOH A:2220 , HOH A:2222 , HOH A:2229
BINDING SITE FOR RESIDUE SO4 A1163
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_068715 (G36W, chain A, )
2: VAR_013757 (V83M, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_068715
G
77
W
8ODP_HUMAN
Polymorphism
11547459
A
G
36
W
2
UniProt
VAR_013757
V
124
M
8ODP_HUMAN
Polymorphism
4866
A
V
83
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: NUDIX (A:3-132)
2: NUDIX_BOX (A:37-58)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUDIX
PS51462
Nudix hydrolase domain profile.
8ODP_HUMAN
44-173
2
A:3-132
2
NUDIX_BOX
PS00893
Nudix box signature.
8ODP_HUMAN
78-99
2
A:37-58
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4c9xa_ (A:)
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)
Protein Domains
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)
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)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nudix
(141)
Superfamily
:
Nudix
(141)
Family
:
MutT-like
(82)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d4c9xa_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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Protein
Nucleic
Backbone
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Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
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Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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Asym.Unit (73 KB)
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