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4C9B
Asym. Unit
Info
Asym.Unit (237 KB)
Biol.Unit 1 (231 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EIF4AIII-CWC22 COMPLEX
Authors
:
G. Buchwald, S. Schuessler, C. Basquin, H. Lehir, E. Conti
Date
:
02 Oct 13 (Deposition) - 13 Nov 13 (Release) - 11 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Splicing, Dead-Box Helicase, Nmd, Mrnp
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Buchwald, S. Schuessler, C. Basquin, H. Le Hir, E. Conti
Crystal Structure Of The Human Eif4Aiii-Cwc22 Complex Shows How A Dead-Box Protein Is Inhibited By A Mif4G Domain
Proc. Natl. Acad. Sci. Usa V. 110 E4611 2013
[
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
2a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
9
Ligand/Ion
GLYCEROL
2
PO4
1
Ligand/Ion
PHOSPHATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:84 , GLY A:85 , THR A:86 , GLY A:87 , LYS A:88 , THR A:89 , GOL A:1419 , PRO B:124 , ARG B:128
BINDING SITE FOR RESIDUE PO4 A1412
02
AC2
SOFTWARE
PHE A:58 , GLU A:59 , LYS A:60 , HOH A:2168 , HOH A:2169
BINDING SITE FOR RESIDUE GOL A1413
03
AC3
SOFTWARE
ASP A:310 , HOH A:2134 , HOH A:2147 , HOH A:2149 , LEU B:275 , THR B:279 , GLY B:311
BINDING SITE FOR RESIDUE GOL A1414
04
AC4
SOFTWARE
TRP A:292 , LYS A:296
BINDING SITE FOR RESIDUE GOL A1415
05
AC5
SOFTWARE
ALA A:55 , GLY A:57 , HOH A:2031 , ARG B:199 , ASP B:380 , ASN B:383
BINDING SITE FOR RESIDUE GOL B1407
06
AC6
SOFTWARE
LEU A:341 , ILE A:349 , ILE A:365 , GLY A:366 , ARG A:373 , HOH A:2157
BINDING SITE FOR RESIDUE GOL A1416
07
AC7
SOFTWARE
LYS A:74 , ARG A:76 , LYS B:250 , GLU B:291
BINDING SITE FOR RESIDUE GOL A1417
08
AC8
SOFTWARE
VAL A:304 , ALA A:327 , SER B:176
BINDING SITE FOR RESIDUE GOL A1418
09
AC9
SOFTWARE
SER A:84 , LYS A:88 , THR A:89 , ASP A:187 , GLU A:188 , ILE A:217 , PO4 A:1412 , HOH A:2049 , HOH A:2050
BINDING SITE FOR RESIDUE GOL A1419
10
BC1
SOFTWARE
CYS A:269 , TYR A:272 , ASP A:273 , LYS B:172
BINDING SITE FOR RESIDUE GOL A1420
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071090 (D270G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071090
D
270
G
IF4A3_HUMAN
Disease (RCPS)
---
A
D
270
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: Q_MOTIF (A:38-66)
2: DEAD_ATP_HELICASE (A:185-193)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
Q_MOTIF
PS51195
DEAD-box RNA helicase Q motif profile.
IF4A3_HUMAN
38-66
1
A:38-66
2
DEAD_ATP_HELICASE
PS00039
DEAD-box subfamily ATP-dependent helicases signature.
IF4A3_HUMAN
185-193
1
A:185-193
[
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Exons
(12, 12)
Info
All Exons
Exon 1.1 (A:21-57)
Exon 1.2 (A:57-81)
Exon 1.3 (A:81-103)
Exon 1.4 (A:104-124)
Exon 1.5 (A:125-169)
Exon 1.6 (A:169-196)
Exon 1.7 (A:196-243)
Exon 1.8 (A:243-289)
Exon 1.9 (A:290-328)
Exon 1.10 (A:328-364 (gaps))
Exon 1.11 (A:364-407)
Exon 1.12 (A:407-411)
View:
Select:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000269349
1
ENSE00001213025
chr17:
78120938-78120592
347
IF4A3_HUMAN
1-57
57
1
A:21-57
37
1.2
ENST00000269349
2
ENSE00000949585
chr17:
78118043-78117971
73
IF4A3_HUMAN
57-81
25
1
A:57-81
25
1.3
ENST00000269349
3
ENSE00000949586
chr17:
78115647-78115581
67
IF4A3_HUMAN
81-103
23
1
A:81-103
23
1.4
ENST00000269349
4
ENSE00000949587
chr17:
78115180-78115118
63
IF4A3_HUMAN
104-124
21
1
A:104-124
21
1.5
ENST00000269349
5
ENSE00001303885
chr17:
78113939-78113807
133
IF4A3_HUMAN
125-169
45
1
A:125-169
45
1.6
ENST00000269349
6
ENSE00000949589
chr17:
78113549-78113469
81
IF4A3_HUMAN
169-196
28
1
A:169-196
28
1.7
ENST00000269349
7
ENSE00000949591
chr17:
78112961-78112820
142
IF4A3_HUMAN
196-243
48
1
A:196-243
48
1.8
ENST00000269349
8
ENSE00001212947
chr17:
78112079-78111941
139
IF4A3_HUMAN
243-289
47
1
A:243-289
47
1.9
ENST00000269349
9
ENSE00001212937
chr17:
78111300-78111185
116
IF4A3_HUMAN
290-328
39
1
A:290-328
39
1.10
ENST00000269349
10
ENSE00000949595
chr17:
78110134-78110027
108
IF4A3_HUMAN
328-364
37
1
A:328-364 (gaps)
37
1.11
ENST00000269349
11
ENSE00001213013
chr17:
78109930-78109803
128
IF4A3_HUMAN
364-407
44
1
A:364-407
44
1.12
ENST00000269349
12
ENSE00001318045
chr17:
78109305-78109019
287
IF4A3_HUMAN
407-411
5
1
A:407-411
5
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4c9ba1 (A:21-243)
1b: SCOP_d4c9ba2 (A:244-411)
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(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Tandem AAA-ATPase domain
(59)
Protein domain
:
automated matches
(5)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d4c9ba1
A:21-243
1b
d4c9ba2
A:244-411
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asym.Unit (237 KB)
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