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4C80
Biol. Unit 1
Info
Asym.Unit (336 KB)
Biol.Unit 1 (653 KB)
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(1)
Title
:
ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO GIGAS (MOP), SOAKED WITH HYDROGEN PEROXIDE
Authors
:
H. D. Correia, M. J. Romao, T. Santos-Silva
Date
:
27 Sep 13 (Deposition) - 15 Jan 14 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Oxidoreductase, Molybdenum Enzyme, Mop, Activation, Inactivation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Marangon, H. D. Correia, C. D. Brondino, J. J. G. Moura, M. J. Romao, P. J. Gonzalez, T. Santos-Silva
Kinetic And Structural Studies Of Aldehyde Oxidoreductase From Desulfovibrio Gigas Reveal A Dithiolene-Based Chemistry For Enzyme Activation And Inhibition By H2O2.
Plos One V. 8 83234 2013
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Hetero Components
(6, 14)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: S-HYDROXYCYSTEINE (CSOa)
4a: FE2/S2 (INORGANIC) CLUSTER (FESa)
4b: FE2/S2 (INORGANIC) CLUSTER (FESb)
5a: ISOPROPYL ALCOHOL (IPAa)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
6c: MAGNESIUM ION (MGc)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
8a: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTI... (PCDa)
9a: HYDROGEN PEROXIDE (PEOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCT
2
Ligand/Ion
BICARBONATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
4
FES
4
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
5
IPA
2
Ligand/Ion
ISOPROPYL ALCOHOL
6
MG
-1
Ligand/Ion
MAGNESIUM ION
7
NA
-1
Ligand/Ion
SODIUM ION
8
PCD
2
Ligand/Ion
(MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)
9
PEO
2
Ligand/Ion
HYDROGEN PEROXIDE
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:99 , CYS A:100 , GLY A:101 , CYS A:103 , CYS A:137 , ARG A:138 , CYS A:139 , ILE A:368
BINDING SITE FOR RESIDUE FES A 908
02
AC2
SOFTWARE
GLY A:39 , CYS A:40 , GLU A:41 , GLY A:43 , GLN A:44 , CYS A:45 , GLY A:46 , CYS A:48 , CYS A:60
BINDING SITE FOR RESIDUE FES A 909
03
AC3
SOFTWARE
LYS A:884 , VAL A:889 , ARG A:890 , TYR A:892 , HOH A:2786
BINDING SITE FOR RESIDUE IPA A 911
04
AC4
SOFTWARE
ARG A:460 , SER A:461 , LEU A:498 , ALA A:531 , PHE A:532 , TYR A:535 , GLY A:536 , GLN A:539 , HOH A:2734
BINDING SITE FOR RESIDUE BCT A 912
05
AC5
SOFTWARE
GLN A:29 , HOH A:2072 , HOH A:2078 , HOH A:2383 , HOH A:2384 , HOH A:3092
BINDING SITE FOR RESIDUE NA A 913
06
AC6
SOFTWARE
GLN A:214 , LYS A:216 , GLN A:452 , HOH A:2410 , HOH A:2729 , HOH A:2730 , HOH A:2732
BINDING SITE FOR RESIDUE NA A 914
07
AC7
SOFTWARE
ASP A:263 , GLU A:899 , GLU A:903 , HOH A:3074 , HOH A:3077 , HOH A:3085
BINDING SITE FOR RESIDUE MG A 915
08
AC8
SOFTWARE
HOH A:2769 , HOH A:3093 , HOH A:3094 , HOH A:3095 , HOH A:3096 , HOH A:3097
BINDING SITE FOR RESIDUE MG A 916
09
AC9
SOFTWARE
HOH A:2187 , HOH A:2192 , HOH A:2326 , HOH A:3098 , HOH A:3099 , HOH A:3100
BINDING SITE FOR RESIDUE MG A 917
10
BC1
SOFTWARE
TYR A:892 , ARG A:893 , HOH A:2608
BINDING SITE FOR RESIDUE CL A 918
11
BC2
SOFTWARE
LYS A:248 , PRO A:898 , GLU A:899
BINDING SITE FOR RESIDUE CL A 919
12
BC3
SOFTWARE
GLY A:344
BINDING SITE FOR RESIDUE CL A 920
13
BC4
SOFTWARE
GLN A:99 , CYS A:139 , THR A:420 , PHE A:421 , GLY A:422 , ALA A:531 , PHE A:532 , ARG A:533 , TRP A:650 , HIS A:653 , GLY A:654 , GLN A:655 , GLY A:656 , GLY A:660 , SER A:695 , GLY A:696 , GLY A:697 , SER A:698 , ARG A:699 , GLN A:700 , GLN A:701 , LEU A:795 , SER A:797 , CYS A:799 , ASN A:800 , THR A:804 , GLN A:807 , ALA A:864 , SER A:865 , GLY A:866 , VAL A:867 , GLY A:868 , GLU A:869 , PEO A:922 , HOH A:2895 , HOH A:2924
BINDING SITE FOR RESIDUE PCD A 921
14
BC5
SOFTWARE
ALA A:531 , GLY A:696 , GLY A:697 , GLU A:869 , PCD A:921 , HOH A:2864
BINDING SITE FOR RESIDUE PEO A 922
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: 2FE2S_FER_2 (A:2-79)
2: 2FE2S_FER_1 (A:40-48)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
2FE2S_FER_2
PS51085
2Fe-2S ferredoxin-type iron-sulfur binding domain profile.
MOP_DESGI
2-79
2
A:2-79
2
2FE2S_FER_1
PS00197
2Fe-2S ferredoxin-type iron-sulfur binding region signature.
MOP_DESGI
40-48
2
A:40-48
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d4c80a2 (A:81-193)
2a: SCOP_d4c80a3 (A:194-310)
3a: SCOP_d4c80a1 (A:1-80)
4a: SCOP_d4c80a4 (A:311-907)
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Classes
(
)
(
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Folds
(
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(
)
Superfamilies
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(
)
Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
CO dehydrogenase ISP C-domain like
(45)
Superfamily
:
CO dehydrogenase ISP C-domain like
(45)
Family
:
CO dehydrogenase ISP C-domain like
(42)
Protein domain
:
Aldehyde oxidoreductase, domain 2
(9)
Desulfovibrio gigas [TaxId: 879]
(8)
1a
d4c80a2
A:81-193
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
alpha/beta-Hammerhead
(191)
Superfamily
:
CO dehydrogenase molybdoprotein N-domain-like
(44)
Family
:
CO dehydrogenase molybdoprotein N-domain-like
(34)
Protein domain
:
Aldehyde oxidoreductase, domain 3
(9)
Desulfovibrio gigas [TaxId: 879]
(8)
2a
d4c80a3
A:194-310
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
2Fe-2S ferredoxin-like
(174)
Family
:
2Fe-2S ferredoxin domains from multidomain proteins
(82)
Protein domain
:
Aldehyde oxidoreductase, N-terminal domain
(9)
Desulfovibrio gigas [TaxId: 879]
(8)
3a
d4c80a1
A:1-80
Fold
:
Molybdenum cofactor-binding domain
(44)
Superfamily
:
Molybdenum cofactor-binding domain
(44)
Family
:
Molybdenum cofactor-binding domain
(44)
Protein domain
:
Aldehyde oxidoreductase
(9)
Desulfovibrio gigas [TaxId: 879]
(8)
4a
d4c80a4
A:311-907
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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Asym.Unit (336 KB)
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