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4C80
Asym. Unit
Info
Asym.Unit (336 KB)
Biol.Unit 1 (653 KB)
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(1)
Title
:
ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO GIGAS (MOP), SOAKED WITH HYDROGEN PEROXIDE
Authors
:
H. D. Correia, M. J. Romao, T. Santos-Silva
Date
:
27 Sep 13 (Deposition) - 15 Jan 14 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Oxidoreductase, Molybdenum Enzyme, Mop, Activation, Inactivation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Marangon, H. D. Correia, C. D. Brondino, J. J. G. Moura, M. J. Romao, P. J. Gonzalez, T. Santos-Silva
Kinetic And Structural Studies Of Aldehyde Oxidoreductase From Desulfovibrio Gigas Reveal A Dithiolene-Based Chemistry For Enzyme Activation And Inhibition By H2O2.
Plos One V. 8 83234 2013
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Hetero Components
(9, 15)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: S-HYDROXYCYSTEINE (CSOa)
4a: FE2/S2 (INORGANIC) CLUSTER (FESa)
4b: FE2/S2 (INORGANIC) CLUSTER (FESb)
5a: ISOPROPYL ALCOHOL (IPAa)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
6c: MAGNESIUM ION (MGc)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
8a: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTI... (PCDa)
9a: HYDROGEN PEROXIDE (PEOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCT
1
Ligand/Ion
BICARBONATE ION
2
CL
3
Ligand/Ion
CHLORIDE ION
3
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
4
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
5
IPA
1
Ligand/Ion
ISOPROPYL ALCOHOL
6
MG
3
Ligand/Ion
MAGNESIUM ION
7
NA
2
Ligand/Ion
SODIUM ION
8
PCD
1
Ligand/Ion
(MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)
9
PEO
1
Ligand/Ion
HYDROGEN PEROXIDE
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:99 , CYS A:100 , GLY A:101 , CYS A:103 , CYS A:137 , ARG A:138 , CYS A:139 , ILE A:368
BINDING SITE FOR RESIDUE FES A 908
02
AC2
SOFTWARE
GLY A:39 , CYS A:40 , GLU A:41 , GLY A:43 , GLN A:44 , CYS A:45 , GLY A:46 , CYS A:48 , CYS A:60
BINDING SITE FOR RESIDUE FES A 909
03
AC3
SOFTWARE
LYS A:884 , VAL A:889 , ARG A:890 , TYR A:892 , HOH A:2786
BINDING SITE FOR RESIDUE IPA A 911
04
AC4
SOFTWARE
ARG A:460 , SER A:461 , LEU A:498 , ALA A:531 , PHE A:532 , TYR A:535 , GLY A:536 , GLN A:539 , HOH A:2734
BINDING SITE FOR RESIDUE BCT A 912
05
AC5
SOFTWARE
GLN A:29 , HOH A:2072 , HOH A:2078 , HOH A:2383 , HOH A:2384 , HOH A:3092
BINDING SITE FOR RESIDUE NA A 913
06
AC6
SOFTWARE
GLN A:214 , LYS A:216 , GLN A:452 , HOH A:2410 , HOH A:2729 , HOH A:2730 , HOH A:2732
BINDING SITE FOR RESIDUE NA A 914
07
AC7
SOFTWARE
ASP A:263 , GLU A:899 , GLU A:903 , HOH A:3074 , HOH A:3077 , HOH A:3085
BINDING SITE FOR RESIDUE MG A 915
08
AC8
SOFTWARE
HOH A:2769 , HOH A:3093 , HOH A:3094 , HOH A:3095 , HOH A:3096 , HOH A:3097
BINDING SITE FOR RESIDUE MG A 916
09
AC9
SOFTWARE
HOH A:2187 , HOH A:2192 , HOH A:2326 , HOH A:3098 , HOH A:3099 , HOH A:3100
BINDING SITE FOR RESIDUE MG A 917
10
BC1
SOFTWARE
TYR A:892 , ARG A:893 , HOH A:2608
BINDING SITE FOR RESIDUE CL A 918
11
BC2
SOFTWARE
LYS A:248 , PRO A:898 , GLU A:899
BINDING SITE FOR RESIDUE CL A 919
12
BC3
SOFTWARE
GLY A:344
BINDING SITE FOR RESIDUE CL A 920
13
BC4
SOFTWARE
GLN A:99 , CYS A:139 , THR A:420 , PHE A:421 , GLY A:422 , ALA A:531 , PHE A:532 , ARG A:533 , TRP A:650 , HIS A:653 , GLY A:654 , GLN A:655 , GLY A:656 , GLY A:660 , SER A:695 , GLY A:696 , GLY A:697 , SER A:698 , ARG A:699 , GLN A:700 , GLN A:701 , LEU A:795 , SER A:797 , CYS A:799 , ASN A:800 , THR A:804 , GLN A:807 , ALA A:864 , SER A:865 , GLY A:866 , VAL A:867 , GLY A:868 , GLU A:869 , PEO A:922 , HOH A:2895 , HOH A:2924
BINDING SITE FOR RESIDUE PCD A 921
14
BC5
SOFTWARE
ALA A:531 , GLY A:696 , GLY A:697 , GLU A:869 , PCD A:921 , HOH A:2864
BINDING SITE FOR RESIDUE PEO A 922
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: 2FE2S_FER_2 (A:2-79)
2: 2FE2S_FER_1 (A:40-48)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
2FE2S_FER_2
PS51085
2Fe-2S ferredoxin-type iron-sulfur binding domain profile.
MOP_DESGI
2-79
1
A:2-79
2
2FE2S_FER_1
PS00197
2Fe-2S ferredoxin-type iron-sulfur binding region signature.
MOP_DESGI
40-48
1
A:40-48
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d4c80a2 (A:81-193)
2a: SCOP_d4c80a3 (A:194-310)
3a: SCOP_d4c80a1 (A:1-80)
4a: SCOP_d4c80a4 (A:311-907)
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)
(
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Folds
(
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(
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(
)
Families
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
CO dehydrogenase ISP C-domain like
(45)
Superfamily
:
CO dehydrogenase ISP C-domain like
(45)
Family
:
CO dehydrogenase ISP C-domain like
(42)
Protein domain
:
Aldehyde oxidoreductase, domain 2
(9)
Desulfovibrio gigas [TaxId: 879]
(8)
1a
d4c80a2
A:81-193
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
alpha/beta-Hammerhead
(191)
Superfamily
:
CO dehydrogenase molybdoprotein N-domain-like
(44)
Family
:
CO dehydrogenase molybdoprotein N-domain-like
(34)
Protein domain
:
Aldehyde oxidoreductase, domain 3
(9)
Desulfovibrio gigas [TaxId: 879]
(8)
2a
d4c80a3
A:194-310
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
2Fe-2S ferredoxin-like
(174)
Family
:
2Fe-2S ferredoxin domains from multidomain proteins
(82)
Protein domain
:
Aldehyde oxidoreductase, N-terminal domain
(9)
Desulfovibrio gigas [TaxId: 879]
(8)
3a
d4c80a1
A:1-80
Fold
:
Molybdenum cofactor-binding domain
(44)
Superfamily
:
Molybdenum cofactor-binding domain
(44)
Family
:
Molybdenum cofactor-binding domain
(44)
Protein domain
:
Aldehyde oxidoreductase
(9)
Desulfovibrio gigas [TaxId: 879]
(8)
4a
d4c80a4
A:311-907
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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