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4C7O
Biol. Unit 1
Info
Asym.Unit (447 KB)
Biol.Unit 1 (241 KB)
Biol.Unit 2 (199 KB)
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(1)
Title
:
THE STRUCTURAL BASIS OF FTSY RECRUITMENT AND GTPASE ACTIVATION BY SRP RNA
Authors
:
F. Voigts-Hoffmann, N. Schmitz, K. Shen, S. O. Shan, S. F. Ataide, N. Ban
Date
:
23 Sep 13 (Deposition) - 20 Nov 13 (Release) - 08 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,E (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Nuclear Protein-Rna Complex, Nuclear Protein, Protein Translocation, Signal Recognition Particle, Signal Recognition Particle Receptor, Gdp Alf3/4
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Voigts-Hoffmann, N. Schmitz, K. Shen, S. O. Shan, S. F. Ataide, N. Ba
The Structural Basis Of Ftsy Recruitment And Gtpase Activation By Srp Rna
Mol. Cell V. 52 643 2013
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: TETRAFLUOROALUMINATE ION (ALFa)
1b: TETRAFLUOROALUMINATE ION (ALFb)
1c: TETRAFLUOROALUMINATE ION (ALFc)
1d: TETRAFLUOROALUMINATE ION (ALFd)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
2d: GUANOSINE-5'-DIPHOSPHATE (GDPd)
2e: GUANOSINE-5'-DIPHOSPHATE (GDPe)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ALF
2
Ligand/Ion
TETRAFLUOROALUMINATE ION
2
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:109 , GLY A:110 , LYS A:113 , ASP A:138 , ARG A:141 , THR A:191 , GLY A:193 , MG A:1002 , GDP A:1003 , HOH A:1004 , HOH A:1005 , HOH A:1006 , HOH A:1007 , GDP B:1003
BINDING SITE FOR RESIDUE ALF A1001
2
AC2
SOFTWARE
THR A:114 , ALF A:1001 , GDP A:1003 , HOH A:1005 , HOH A:1006 , HOH A:1007
BINDING SITE FOR RESIDUE MG A1002
3
AC3
SOFTWARE
GLY A:110 , ALA A:111 , GLY A:112 , LYS A:113 , THR A:114 , THR A:115 , LYS A:119 , ARG A:141 , GLN A:147 , LYS A:249 , ASP A:251 , GLY A:274 , VAL A:275 , GLY A:276 , GLU A:277 , ALF A:1001 , MG A:1002 , HOH A:1005 , HOH A:2066 , ASN B:108 , GLY B:109 , ARG B:139 , LEU B:193 , ALF B:1001
BINDING SITE FOR RESIDUE GDP A1003
4
AC4
SOFTWARE
GDP A:1003 , HOH A:2039 , ASN B:108 , GLY B:109 , LYS B:112 , ASP B:136 , ARG B:139 , ALA B:190 , GLY B:191 , MG B:1002 , GDP B:1003 , HOH B:1004 , HOH B:1005 , HOH B:1006 , HOH B:1007
BINDING SITE FOR RESIDUE ALF B1001
5
AC5
SOFTWARE
THR B:113 , ASP B:188 , ALF B:1001 , GDP B:1003 , HOH B:1005 , HOH B:1006 , HOH B:1007
BINDING SITE FOR RESIDUE MG B1002
6
AC6
SOFTWARE
GLN A:109 , ARG A:141 , LEU A:195 , ALF A:1001 , HOH A:2017 , GLY B:109 , VAL B:110 , GLY B:111 , LYS B:112 , THR B:113 , THR B:114 , GLN B:145 , LYS B:253 , ASP B:255 , GLY B:278 , VAL B:279 , GLY B:280 , GLU B:281 , ALF B:1001 , MG B:1002 , HOH B:1005 , HOH B:1006 , HOH B:2021 , HOH B:2077
BINDING SITE FOR RESIDUE GDP B1003
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SRP54 (A:269-282)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SRP54
PS00300
SRP54-type proteins GTP-binding domain signature.
SRP54_ECOLI
269-282
1
A:269-282
-
FTSY_ECOLI
467-480
1
B:273-286
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4c7ob1 (B:30-90)
1b: SCOP_d4c7od1 (D:26-90)
2a: SCOP_d4c7ob2 (B:91-300)
2b: SCOP_d4c7od2 (D:91-302)
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Families
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)
(
)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Domain of the SRP/SRP receptor G-proteins
(34)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Escherichia coli K-12 [TaxId: 83333]
(2)
1a
d4c7ob1
B:30-90
1b
d4c7od1
D:26-90
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nitrogenase iron protein-like
(152)
Protein domain
:
automated matches
(19)
Escherichia coli K-12 [TaxId: 83333]
(2)
2a
d4c7ob2
B:91-300
2b
d4c7od2
D:91-302
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (447 KB)
Header - Asym.Unit
Biol.Unit 1 (241 KB)
Header - Biol.Unit 1
Biol.Unit 2 (199 KB)
Header - Biol.Unit 2
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