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4C7J
Asym. Unit
Info
Asym.Unit (186 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
11B-HYDROXYSTEROID DEHYDROGENASE TYPE I IN COMPLEX WITH INHIBITOR
Authors
:
F. W. Goldberg, A. G. Dossetter, J. S. Scott, G. R. Robb, S. Boyd, S. D. Gro P. D. Kemmitt, T. Sjogren, P. Morentin Gutierrez, J. De Schoolmeest J. G. Swales, A. V. Turnbull, M. J. Wild
Date
:
23 Sep 13 (Deposition) - 03 Sep 14 (Release) - 03 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.16
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Oxidoreductase, Cns Penetration, Structure-Based Design
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. W. Goldberg, A. G. Dossetter, J. S. Scott, G. R. Robb, S. Boyd, S. D. Groombridge, P. D. Kemmitt, T. Sjogren, P. M. Gutierrez, J. Deschoolmeester, J. G. Swales, A. V. Turnbull, M. J. Wild
Optimization Of Brain Penetrant 11Beta-Hydroxysteroid Dehydrogenase Type I Inhibitors And In Vivo Testing In Diet- Induced Obese Mice.
J. Med. Chem. V. 57 970 2014
[
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 4-CYCLOPROPYL-2-(2-HYDROXYETHYLOXY... (4YQa)
1b: 4-CYCLOPROPYL-2-(2-HYDROXYETHYLOXY... (4YQb)
1c: 4-CYCLOPROPYL-2-(2-HYDROXYETHYLOXY... (4YQc)
1d: 4-CYCLOPROPYL-2-(2-HYDROXYETHYLOXY... (4YQd)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4YQ
4
Ligand/Ion
4-CYCLOPROPYL-2-(2-HYDROXYETHYLOXY)-N-[(1S,3R)-5-OXIDANYL-2-ADAMANTYL]-1,3-THIAZOLE-5-CARBOXAMIDE
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:41 , SER A:43 , LYS A:44 , GLY A:45 , ILE A:46 , ALA A:65 , ARG A:66 , SER A:67 , THR A:92 , MET A:93 , ASN A:119 , ILE A:121 , VAL A:168 , SER A:169 , TYR A:183 , LYS A:187 , LEU A:215 , GLY A:216 , LEU A:217 , ILE A:218 , THR A:220 , THR A:222 , ALA A:223 , 4YQ A:1287 , HOH A:2015 , HOH A:2016 , HOH A:2018 , HOH A:2044 , HOH A:2096 , HOH A:2188
BINDING SITE FOR RESIDUE NAP A1286
2
AC2
SOFTWARE
GLY B:41 , ALA B:42 , SER B:43 , LYS B:44 , GLY B:45 , ILE B:46 , ALA B:65 , ARG B:66 , SER B:67 , THR B:92 , MET B:93 , ASN B:119 , ILE B:121 , VAL B:168 , SER B:169 , SER B:170 , TYR B:183 , LYS B:187 , LEU B:215 , GLY B:216 , LEU B:217 , ILE B:218 , THR B:220 , THR B:222 , ALA B:223 , 4YQ B:1293 , HOH B:2008 , HOH B:2009 , HOH B:2012 , HOH B:2032 , HOH B:2132 , HOH B:2164 , HOH B:2165 , HOH B:2166
BINDING SITE FOR RESIDUE NAP B1292
3
AC3
SOFTWARE
GLY C:41 , ALA C:42 , SER C:43 , LYS C:44 , GLY C:45 , ILE C:46 , ALA C:65 , ARG C:66 , SER C:67 , THR C:92 , MET C:93 , ASN C:119 , ILE C:121 , VAL C:168 , SER C:169 , SER C:170 , TYR C:183 , LYS C:187 , LEU C:215 , GLY C:216 , LEU C:217 , ILE C:218 , THR C:220 , THR C:222 , ALA C:223 , 4YQ C:1283 , HOH C:2010 , HOH C:2011 , HOH C:2012 , HOH C:2013 , HOH C:2014 , HOH C:2025 , HOH C:2061 , HOH C:2151 , HOH C:2152
BINDING SITE FOR RESIDUE NAP C1282
4
AC4
SOFTWARE
GLY D:41 , ALA D:42 , SER D:43 , LYS D:44 , GLY D:45 , ILE D:46 , ALA D:65 , ARG D:66 , SER D:67 , THR D:92 , MET D:93 , ASN D:119 , ILE D:121 , VAL D:168 , SER D:169 , SER D:170 , TYR D:183 , LYS D:187 , LEU D:215 , GLY D:216 , LEU D:217 , ILE D:218 , THR D:220 , THR D:222 , ALA D:223 , 4YQ D:1284 , HOH D:2007 , HOH D:2025 , HOH D:2074
BINDING SITE FOR RESIDUE NAP D1283
5
AC5
SOFTWARE
SER A:170 , TYR A:177 , TYR A:183 , LEU A:215 , GLY A:216 , LEU A:217 , MET A:233 , ASP A:259 , NAP A:1286 , HOH A:2097 , HOH A:2160 , TYR B:280 , TYR B:284
BINDING SITE FOR RESIDUE 4YQ A1287
6
AC6
SOFTWARE
TYR A:280 , TYR A:284 , THR B:124 , SER B:170 , LEU B:171 , TYR B:177 , TYR B:183 , LEU B:215 , GLY B:216 , LEU B:217 , THR B:222 , ALA B:226 , MET B:233 , ASP B:259 , NAP B:1292 , HOH B:2081 , HOH B:2164
BINDING SITE FOR RESIDUE 4YQ B1293
7
AC7
SOFTWARE
THR C:124 , LEU C:126 , SER C:170 , TYR C:177 , TYR C:183 , LEU C:215 , GLY C:216 , LEU C:217 , THR C:222 , ALA C:226 , MET C:233 , ASP C:259 , NAP C:1282 , HOH C:2063 , HOH C:2151 , TYR D:280
BINDING SITE FOR RESIDUE 4YQ C1283
8
AC8
SOFTWARE
LEU D:126 , SER D:170 , TYR D:177 , TYR D:183 , LEU D:215 , LEU D:217 , ALA D:226 , ASP D:259 , NAP D:1283 , HOH D:2042
BINDING SITE FOR RESIDUE 4YQ D1284
[
close Site info
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SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035845 (V148E, chain A/B/C/D, )
2: VAR_DHI1_HUMAN_CCDS1489_1_01 (V148E, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035845
V
148
E
DHI1_HUMAN
Unclassified
---
A/B/C/D
V
148
E
2
CancerSNP
VAR_DHI1_HUMAN_CCDS1489_1_01
*
V
148
E
DHI1_HUMAN
Disease (Breast cancer)
---
A/B/C/D
V
148
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:170-198,B:170-198,C:170-198,D:17...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
DHI1_HUMAN
170-198
4
A:170-198
B:170-198
C:170-198
D:170-198
[
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Exons
(6, 24)
Info
All Exons
Exon 1.2b (A:26-30 | B:26-30 | C:26-30 | D:26...)
Exon 1.3 (A:30-73 | B:30-73 | C:30-73 | D:30...)
Exon 1.4 (A:74-111 | B:74-111 | C:74-111 | D...)
Exon 1.5 (A:111-173 | B:111-173 | C:111-173 ...)
Exon 1.6 (A:173-221 | B:173-221 | C:173-221 ...)
Exon 1.7a (A:221-285 | B:221-291 | C:221-281 ...)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7a
7: Boundary 1.7a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367028
1a
ENSE00001443288
chr1:
209859510-209859630
121
DHI1_HUMAN
-
0
0
-
-
1.2b
ENST00000367028
2b
ENSE00001443287
chr1:
209878240-209878375
136
DHI1_HUMAN
1-30
30
4
A:26-30
B:26-30
C:26-30
D:26-30
5
5
5
5
1.3
ENST00000367028
3
ENSE00000792110
chr1:
209879156-209879286
131
DHI1_HUMAN
30-73
44
4
A:30-73
B:30-73
C:30-73
D:30-73
44
44
44
44
1.4
ENST00000367028
4
ENSE00000792111
chr1:
209880054-209880165
112
DHI1_HUMAN
74-111
38
4
A:74-111
B:74-111
C:74-111
D:74-111
38
38
38
38
1.5
ENST00000367028
5
ENSE00000792112
chr1:
209880288-209880473
186
DHI1_HUMAN
111-173
63
4
A:111-173
B:111-173
C:111-173
D:111-173
63
63
63
63
1.6
ENST00000367028
6
ENSE00000792113
chr1:
209905781-209905924
144
DHI1_HUMAN
173-221
49
4
A:173-221
B:173-221
C:173-221
D:173-221
49
49
49
49
1.7a
ENST00000367028
7a
ENSE00001443286
chr1:
209907649-209908209
561
DHI1_HUMAN
221-292
72
4
A:221-285
B:221-291
C:221-281
D:221-282 (gaps)
65
71
61
62
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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