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4C7F
Biol. Unit 1
Info
Asym.Unit (192 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (96 KB)
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(1)
Title
:
STRUCTURE AND ACTIVITY OF THE GH20 BETA-N-ACETYLHEXOSAMINIDASE FROM STREPTOMYCES COELICOLOR A3(2)
Authors
:
N. Nguyen Thi, W. A. Offen, G. J. Davies, N. Doucet
Date
:
20 Sep 13 (Deposition) - 12 Mar 14 (Release) - 09 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, N-Acetylhexosaminides, Chitin Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Nguyen Thi, W. A. Offen, F. Shareck, G. J. Davies, N. Doucet
Structure And Activity Of The Streptomyces Coelicolor A3(2) Beta-N-Acetylhexosaminidase Provides Further Insight Into Gh20 Family Catalysis And Inhibition.
Biochemistry V. 53 1789 2014
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: 6-ACETAMIDO-6-DEOXY-CASTANOSPERMIN... (GC2a)
2b: 6-ACETAMIDO-6-DEOXY-CASTANOSPERMIN... (GC2b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
17
Ligand/Ion
1,2-ETHANEDIOL
2
GC2
1
Ligand/Ion
6-ACETAMIDO-6-DEOXY-CASTANOSPERMINE
[
close Hetero Component info
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC2 (SOFTWARE)
10: BC3 (SOFTWARE)
11: BC4 (SOFTWARE)
12: BC6 (SOFTWARE)
13: BC7 (SOFTWARE)
14: BC8 (SOFTWARE)
15: BC9 (SOFTWARE)
16: CC5 (SOFTWARE)
17: CC6 (SOFTWARE)
18: CC7 (SOFTWARE)
19: CC9 (SOFTWARE)
20: DC1 (SOFTWARE)
21: DC2 (SOFTWARE)
22: DC3 (SOFTWARE)
23: DC6 (SOFTWARE)
24: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:333 , GLN A:334 , TRP A:349 , THR A:354 , GLU A:358 , HOH A:2434 , HOH A:2540
BINDING SITE FOR RESIDUE EDO A1495
02
AC2
SOFTWARE
ASP A:214 , LYS B:388 , ASP B:389 , THR B:390 , PRO B:391 , HOH B:2579 , HOH B:2580
BINDING SITE FOR RESIDUE EDO B1495
03
AC3
SOFTWARE
ARG A:40 , ASP A:44 , HOH A:2090
BINDING SITE FOR RESIDUE EDO A1496
04
AC4
SOFTWARE
ARG A:71 , ASP B:274 , ARG B:317 , EDO B:1497 , HOH B:2413
BINDING SITE FOR RESIDUE EDO B1496
05
AC5
SOFTWARE
VAL A:271 , ARG A:317 , HOH A:2541
BINDING SITE FOR RESIDUE EDO A1497
06
AC6
SOFTWARE
ARG A:69 , ARG A:71 , HOH A:2059 , ASP B:274 , TYR B:277 , ASP B:278 , ARG B:317 , EDO B:1496
BINDING SITE FOR RESIDUE EDO B1497
07
AC8
SOFTWARE
THR A:268 , LEU A:269 , CYS A:270 , VAL A:271 , PRO A:307 , ASP A:310 , HOH A:2359
BINDING SITE FOR RESIDUE EDO A1498
08
AC9
SOFTWARE
ASP A:352 , LYS A:359 , TYR A:413 , PRO A:415 , HOH A:2415 , HOH A:2542
BINDING SITE FOR RESIDUE EDO A1499
09
BC2
SOFTWARE
ALA A:366 , HOH A:2490 , SER B:355 , ASP B:356 , ALA B:357 , EDO B:1503 , HOH B:2582 , HOH B:2583 , HOH B:2584
BINDING SITE FOR RESIDUE EDO B1500
10
BC3
SOFTWARE
GLU A:420 , HOH A:2483 , HOH A:2484 , GLU B:358 , GLN B:361 , HOH B:2585
BINDING SITE FOR RESIDUE EDO B1501
11
BC4
SOFTWARE
ARG A:138 , HOH A:2218 , HOH A:2486 , HOH A:2543 , HOH A:2544
BINDING SITE FOR RESIDUE EDO A1500
12
BC6
SOFTWARE
ASP A:188 , SER A:189 , PRO A:191 , HIS B:30 , GLY B:64 , HIS B:65
BINDING SITE FOR RESIDUE EDO A1501
13
BC7
SOFTWARE
ASP A:85 , SER A:86 , GLY A:131 , HOH A:2035 , HOH A:2546
BINDING SITE FOR RESIDUE EDO A1502
14
BC8
SOFTWARE
ARG A:367 , GLY A:369 , SER B:355 , ASP B:356 , EDO B:1500 , HOH B:2442 , HOH B:2457
BINDING SITE FOR RESIDUE EDO B1503
15
BC9
SOFTWARE
ASN A:240 , PRO A:257 , LEU A:258 , TYR A:259 , HOH A:2343 , HOH A:2547
BINDING SITE FOR RESIDUE EDO A1503
16
CC5
SOFTWARE
PHE A:152 , GLU A:157 , SER A:435 , ASP A:436 , PRO A:437 , HOH A:2228 , HOH A:2236 , HOH A:2548 , HOH A:2549
BINDING SITE FOR RESIDUE EDO A1504
17
CC6
SOFTWARE
GLU A:80 , LYS A:172 , ARG A:294 , HOH A:2253 , HOH A:2374 , HOH A:2550
BINDING SITE FOR RESIDUE EDO A1505
18
CC7
SOFTWARE
ARG A:138 , ALA A:140 , HOH A:2136
BINDING SITE FOR RESIDUE EDO A1506
19
CC9
SOFTWARE
PRO A:137 , ARG A:138 , PRO A:458 , HOH A:2206 , HOH A:2209 , HOH A:2505 , HOH A:2543 , HOH A:2551
BINDING SITE FOR RESIDUE EDO A1507
20
DC1
SOFTWARE
GLY A:87 , GLY A:90 , VAL A:91 , THR A:92 , HOH A:2150
BINDING SITE FOR RESIDUE EDO A1508
21
DC2
SOFTWARE
VAL A:42 , SER A:224 , HIS A:226 , HOH A:2068 , HOH A:2309 , HOH A:2552
BINDING SITE FOR RESIDUE EDO A1509
22
DC3
SOFTWARE
PRO A:410 , ALA A:411 , ALA A:412 , TYR A:413 , LEU A:414 , ALA A:417 , VAL A:422 , HOH A:2553
BINDING SITE FOR RESIDUE EDO A1510
23
DC6
SOFTWARE
ARG A:150 , VAL A:264 , ASP A:301 , GLU A:302 , TRP A:332 , TRP A:349 , TYR A:381 , TRP A:396 , TRP A:430 , GLU A:432 , HOH A:2257 , HOH A:2349 , HOH A:2448 , HOH A:2554
BINDING SITE FOR RESIDUE GC2 A1511
24
DC7
SOFTWARE
ARG A:24 , THR A:26 , ARG A:27 , TYR A:56 , HOH B:2202
BINDING SITE FOR RESIDUE EDO A1512
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4c7fa1 (A:1-138)
1b: SCOP_d4c7fb1 (B:2-138)
2a: SCOP_d4c7fa2 (A:139-494)
2b: SCOP_d4c7fb2 (B:139-494)
View:
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Classes
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(
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
automated matches
(9)
Protein domain
:
automated matches
(9)
Streptomyces coelicolor [TaxId: 1902]
(3)
1a
d4c7fa1
A:1-138
1b
d4c7fb1
B:2-138
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-N-acetylhexosaminidase catalytic domain
(22)
Protein domain
:
automated matches
(3)
Streptomyces coelicolor [TaxId: 1902]
(3)
2a
d4c7fa2
A:139-494
2b
d4c7fb2
B:139-494
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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