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4C7F
Asym. Unit
Info
Asym.Unit (192 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (96 KB)
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(1)
Title
:
STRUCTURE AND ACTIVITY OF THE GH20 BETA-N-ACETYLHEXOSAMINIDASE FROM STREPTOMYCES COELICOLOR A3(2)
Authors
:
N. Nguyen Thi, W. A. Offen, G. J. Davies, N. Doucet
Date
:
20 Sep 13 (Deposition) - 12 Mar 14 (Release) - 09 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, N-Acetylhexosaminides, Chitin Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Nguyen Thi, W. A. Offen, F. Shareck, G. J. Davies, N. Doucet
Structure And Activity Of The Streptomyces Coelicolor A3(2) Beta-N-Acetylhexosaminidase Provides Further Insight Into Gh20 Family Catalysis And Inhibition.
Biochemistry V. 53 1789 2014
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Hetero Components
(2, 34)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: 6-ACETAMIDO-6-DEOXY-CASTANOSPERMIN... (GC2a)
2b: 6-ACETAMIDO-6-DEOXY-CASTANOSPERMIN... (GC2b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
32
Ligand/Ion
1,2-ETHANEDIOL
2
GC2
2
Ligand/Ion
6-ACETAMIDO-6-DEOXY-CASTANOSPERMINE
[
close Hetero Component info
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Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:333 , GLN A:334 , TRP A:349 , THR A:354 , GLU A:358 , HOH A:2434 , HOH A:2540
BINDING SITE FOR RESIDUE EDO A1495
02
AC2
SOFTWARE
ASP A:214 , LYS B:388 , ASP B:389 , THR B:390 , PRO B:391 , HOH B:2579 , HOH B:2580
BINDING SITE FOR RESIDUE EDO B1495
03
AC3
SOFTWARE
ARG A:40 , ASP A:44 , HOH A:2090
BINDING SITE FOR RESIDUE EDO A1496
04
AC4
SOFTWARE
ARG A:71 , ASP B:274 , ARG B:317 , EDO B:1497 , HOH B:2413
BINDING SITE FOR RESIDUE EDO B1496
05
AC5
SOFTWARE
VAL A:271 , ARG A:317 , HOH A:2541
BINDING SITE FOR RESIDUE EDO A1497
06
AC6
SOFTWARE
ARG A:69 , ARG A:71 , HOH A:2059 , ASP B:274 , TYR B:277 , ASP B:278 , ARG B:317 , EDO B:1496
BINDING SITE FOR RESIDUE EDO B1497
07
AC7
SOFTWARE
ASN B:240 , PRO B:256 , PRO B:257 , HOH B:2347 , HOH B:2581
BINDING SITE FOR RESIDUE EDO B1498
08
AC8
SOFTWARE
THR A:268 , LEU A:269 , CYS A:270 , VAL A:271 , PRO A:307 , ASP A:310 , HOH A:2359
BINDING SITE FOR RESIDUE EDO A1498
09
AC9
SOFTWARE
ASP A:352 , LYS A:359 , TYR A:413 , PRO A:415 , HOH A:2415 , HOH A:2542
BINDING SITE FOR RESIDUE EDO A1499
10
BC1
SOFTWARE
ASP B:352 , LYS B:359 , TYR B:413 , PRO B:415 , HOH B:2441
BINDING SITE FOR RESIDUE EDO B1499
11
BC2
SOFTWARE
ALA A:366 , HOH A:2490 , SER B:355 , ASP B:356 , ALA B:357 , EDO B:1503 , HOH B:2582 , HOH B:2583 , HOH B:2584
BINDING SITE FOR RESIDUE EDO B1500
12
BC3
SOFTWARE
GLU A:420 , HOH A:2483 , HOH A:2484 , GLU B:358 , GLN B:361 , HOH B:2585
BINDING SITE FOR RESIDUE EDO B1501
13
BC4
SOFTWARE
ARG A:138 , HOH A:2218 , HOH A:2486 , HOH A:2543 , HOH A:2544
BINDING SITE FOR RESIDUE EDO A1500
14
BC5
SOFTWARE
TYR B:23 , THR B:26 , GLY B:28 , THR B:29 , GLY B:67 , EDO B:1507 , HOH B:2041 , HOH B:2149
BINDING SITE FOR RESIDUE EDO B1502
15
BC6
SOFTWARE
ASP A:188 , SER A:189 , PRO A:191 , HIS B:30 , GLY B:64 , HIS B:65
BINDING SITE FOR RESIDUE EDO A1501
16
BC7
SOFTWARE
ASP A:85 , SER A:86 , GLY A:131 , HOH A:2035 , HOH A:2546
BINDING SITE FOR RESIDUE EDO A1502
17
BC8
SOFTWARE
ARG A:367 , GLY A:369 , SER B:355 , ASP B:356 , EDO B:1500 , HOH B:2442 , HOH B:2457
BINDING SITE FOR RESIDUE EDO B1503
18
BC9
SOFTWARE
ASN A:240 , PRO A:257 , LEU A:258 , TYR A:259 , HOH A:2343 , HOH A:2547
BINDING SITE FOR RESIDUE EDO A1503
19
CC1
SOFTWARE
LYS B:468 , PRO B:489 , GLN B:490 , VAL B:491 , PRO B:492 , HOH B:2586
BINDING SITE FOR RESIDUE EDO B1504
20
CC2
SOFTWARE
ARG B:403 , HOH B:2553 , HOH B:2555
BINDING SITE FOR RESIDUE EDO B1505
21
CC3
SOFTWARE
SER B:86 , GLU B:89 , GLY B:131 , THR B:132
BINDING SITE FOR RESIDUE EDO B1506
22
CC4
SOFTWARE
HIS B:65 , EDO B:1502 , HOH B:2147 , HOH B:2587 , HOH B:2588 , HOH B:2589
BINDING SITE FOR RESIDUE EDO B1507
23
CC5
SOFTWARE
PHE A:152 , GLU A:157 , SER A:435 , ASP A:436 , PRO A:437 , HOH A:2228 , HOH A:2236 , HOH A:2548 , HOH A:2549
BINDING SITE FOR RESIDUE EDO A1504
24
CC6
SOFTWARE
GLU A:80 , LYS A:172 , ARG A:294 , HOH A:2253 , HOH A:2374 , HOH A:2550
BINDING SITE FOR RESIDUE EDO A1505
25
CC7
SOFTWARE
ARG A:138 , ALA A:140 , HOH A:2136
BINDING SITE FOR RESIDUE EDO A1506
26
CC8
SOFTWARE
HIS B:333 , GLN B:334 , TRP B:349 , THR B:354 , GLU B:358 , HOH B:2428 , HOH B:2460
BINDING SITE FOR RESIDUE EDO B1508
27
CC9
SOFTWARE
PRO A:137 , ARG A:138 , PRO A:458 , HOH A:2206 , HOH A:2209 , HOH A:2505 , HOH A:2543 , HOH A:2551
BINDING SITE FOR RESIDUE EDO A1507
28
DC1
SOFTWARE
GLY A:87 , GLY A:90 , VAL A:91 , THR A:92 , HOH A:2150
BINDING SITE FOR RESIDUE EDO A1508
29
DC2
SOFTWARE
VAL A:42 , SER A:224 , HIS A:226 , HOH A:2068 , HOH A:2309 , HOH A:2552
BINDING SITE FOR RESIDUE EDO A1509
30
DC3
SOFTWARE
PRO A:410 , ALA A:411 , ALA A:412 , TYR A:413 , LEU A:414 , ALA A:417 , VAL A:422 , HOH A:2553
BINDING SITE FOR RESIDUE EDO A1510
31
DC4
SOFTWARE
ARG B:353 , HOH B:2591 , HOH B:2592
BINDING SITE FOR RESIDUE EDO B1509
32
DC5
SOFTWARE
ARG B:150 , VAL B:264 , ASP B:301 , GLU B:302 , TRP B:332 , TRP B:349 , TYR B:381 , TRP B:396 , TRP B:430 , GLU B:432 , HOH B:2269 , HOH B:2356 , HOH B:2479 , HOH B:2593
BINDING SITE FOR RESIDUE GC2 B1510
33
DC6
SOFTWARE
ARG A:150 , VAL A:264 , ASP A:301 , GLU A:302 , TRP A:332 , TRP A:349 , TYR A:381 , TRP A:396 , TRP A:430 , GLU A:432 , HOH A:2257 , HOH A:2349 , HOH A:2448 , HOH A:2554
BINDING SITE FOR RESIDUE GC2 A1511
34
DC7
SOFTWARE
ARG A:24 , THR A:26 , ARG A:27 , TYR A:56 , HOH B:2202
BINDING SITE FOR RESIDUE EDO A1512
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close Site info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4c7fa1 (A:1-138)
1b: SCOP_d4c7fb1 (B:2-138)
2a: SCOP_d4c7fa2 (A:139-494)
2b: SCOP_d4c7fb2 (B:139-494)
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Classes
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
automated matches
(9)
Protein domain
:
automated matches
(9)
Streptomyces coelicolor [TaxId: 1902]
(3)
1a
d4c7fa1
A:1-138
1b
d4c7fb1
B:2-138
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-N-acetylhexosaminidase catalytic domain
(22)
Protein domain
:
automated matches
(3)
Streptomyces coelicolor [TaxId: 1902]
(3)
2a
d4c7fa2
A:139-494
2b
d4c7fb2
B:139-494
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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