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4C71
Asym. Unit
Info
Asym.Unit (291 KB)
Biol.Unit 1 (280 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF M. TUBERCULOSIS C171Q KASA IN COMPLEX WITH TLM18
Authors
:
J. Schiebel, K. Kapilashrami, A. Fekete, G. R. Bommineni, C. M. Schaefe M. J. Mueller, P. J. Tonge, C. Kisker
Date
:
19 Sep 13 (Deposition) - 09 Oct 13 (Release) - 11 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase, Beto-Ketoacyl-Acp Synthase, Kas Enzyme, Condensing Enzyme, Type 2 Fatty Acid Biosynthesis, Mycolic Acid Synthesis, Thiolactomycin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Schiebel, K. Kapilashrami, A. Fekete, G. R. Bommineni, C. M. Schaefer, M. J. Mueller, P. J. Tonge, C. Kisker
Structural Basis For The Recognition Of Mycolic Acid Precursors By Kasa, A Condensing Enzyme And Drug Target From Mycobacterium Tuberculosis
J. Biol. Chem. V. 288 34190 2013
[
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: (R,E)-3-(4-AZIDOBUTYL)-4-HYDROXY-5... (7RDa)
1b: (R,E)-3-(4-AZIDOBUTYL)-4-HYDROXY-5... (7RDb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: FORMIC ACID (FMTa)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
5a: (2R)-2-(HEXADECANOYLOXY)-3-{[(10R)... (M7Ua)
5b: (2R)-2-(HEXADECANOYLOXY)-3-{[(10R)... (M7Ub)
View:
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Label:
No.
Name
Count
Type
Full Name
1
7RD
2
Ligand/Ion
(R,E)-3-(4-AZIDOBUTYL)-4-HYDROXY-5-METHYL-5-(2-METHYLBUTA-1,3-DIEN-1-YL)THIOPHEN-2(5H)-ONE
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
FMT
1
Ligand/Ion
FORMIC ACID
4
K
2
Ligand/Ion
POTASSIUM ION
5
M7U
2
Ligand/Ion
(2R)-2-(HEXADECANOYLOXY)-3-{[(10R)-10-METHYLOCTADECANOYL]OXY}PROPYL PHOSPHATE
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:69 , TYR A:82 , PRO A:201 , M7U A:1424 , HOH A:2112 , HOH A:2115
BINDING SITE FOR RESIDUE EDO A1417
02
AC2
SOFTWARE
TRP A:54 , HOH A:2268 , TYR B:126 , ASN B:130 , HOH B:2357
BINDING SITE FOR RESIDUE EDO B1417
03
AC3
SOFTWARE
ARG A:121 , GLU A:124 , SER A:125 , LEU A:128 , SER A:138 , MET A:144
BINDING SITE FOR RESIDUE EDO A1418
04
AC4
SOFTWARE
TYR A:126 , ASN A:130 , HOH A:2432 , HOH A:2433 , LEU B:205
BINDING SITE FOR RESIDUE EDO A1419
05
AC5
SOFTWARE
ARG A:79 , GLN A:84 , GLN A:143 , MET A:144 , HOH A:2434
BINDING SITE FOR RESIDUE EDO A1420
06
AC6
SOFTWARE
ASN A:309 , ALA A:310 , HIS A:311 , GLU A:354 , ASN A:399 , ASN A:400
BINDING SITE FOR RESIDUE K A1421
07
AC7
SOFTWARE
ASN B:309 , ALA B:310 , HIS B:311 , GLU B:354 , ASN B:399 , ASN B:400
BINDING SITE FOR RESIDUE K B1418
08
AC8
SOFTWARE
VAL A:385 , ALA A:386 , ARG A:390 , HOH A:2416 , HOH A:2437 , ARG B:79
BINDING SITE FOR RESIDUE FMT A1422
09
AC9
SOFTWARE
GLN A:171 , PHE A:210 , PHE A:237 , PHE A:239 , VAL A:278 , ALA A:279 , PRO A:280 , HIS A:311 , THR A:313 , HIS A:345 , ILE A:347 , PHE A:402 , GLY A:403 , PHE A:404 , GLY A:406 , HOH A:2370
BINDING SITE FOR RESIDUE 7RD A1423
10
BC1
SOFTWARE
GLN B:171 , PHE B:210 , PHE B:237 , PHE B:239 , HIS B:276 , MET B:277 , VAL B:278 , ALA B:279 , PRO B:280 , HIS B:311 , THR B:313 , HIS B:345 , ILE B:347 , PHE B:402 , GLY B:403 , PHE B:404 , GLY B:406 , HOH B:2266 , HOH B:2301
BINDING SITE FOR RESIDUE 7RD B1419
11
BC2
SOFTWARE
TYR A:82 , GLY A:115 , GLU A:120 , ALA A:170 , GLY A:200 , PRO A:201 , ILE A:202 , GLU A:203 , PRO A:206 , ALA A:209 , HIS A:345 , ILE A:347 , EDO A:1417 , VAL B:142 , ILE B:145
BINDING SITE FOR RESIDUE M7U A1424
12
BC3
SOFTWARE
VAL A:142 , ILE A:145 , GLY B:115 , GLU B:120 , ALA B:170 , GLY B:200 , PRO B:201 , GLU B:203 , ALA B:209 , HIS B:345 , ILE B:347
BINDING SITE FOR RESIDUE M7U B1420
13
BC4
SOFTWARE
SER B:211 , ARG B:214 , ALA B:215 , MET B:216
BINDING SITE FOR RESIDUE EDO B1421
14
BC5
SOFTWARE
THR A:292 , LEU A:300 , PRO A:302 , HOH A:2359 , HOH A:2362
BINDING SITE FOR RESIDUE EDO A1425
15
BC6
SOFTWARE
TRP A:54 , ASP A:55 , LEU A:56 , ALA A:57 , HOH A:2029 , HOH A:2438 , PRO B:134 , ARG B:135
BINDING SITE FOR RESIDUE EDO A1426
16
BC7
SOFTWARE
LEU B:300
BINDING SITE FOR RESIDUE EDO B1422
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4c71a1 (A:2-259)
1b: SCOP_d4c71a2 (A:260-416)
1c: SCOP_d4c71b1 (B:2-259)
1d: SCOP_d4c71b2 (B:260-416)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Mycobacterium tuberculosis [TaxId: 83332]
(9)
1a
d4c71a1
A:2-259
1b
d4c71a2
A:260-416
1c
d4c71b1
B:2-259
1d
d4c71b2
B:260-416
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (291 KB)
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