PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4C70
Asym. Unit
Info
Asym.Unit (288 KB)
Biol.Unit 1 (277 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF M. TUBERCULOSIS C171Q KASA IN COMPLEX WITH TLM4
Authors
:
J. Schiebel, K. Kapilashrami, A. Fekete, G. R. Bommineni, C. M. Schaefe M. J. Mueller, P. J. Tonge, C. Kisker
Date
:
19 Sep 13 (Deposition) - 09 Oct 13 (Release) - 11 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase, Kas Enzyme, Condensing Enzyme, Type 2 Fatty Acid Biosynthesis, Mycolic Acid Synthesis, Thiolactomycin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Schiebel, K. Kapilashrami, A. Fekete, G. R. Bommineni, C. M. Schaefer, M. J. Mueller, P. J. Tonge, C. Kisker
Structural Basis For The Recognition Of Mycolic Acid Precursors By Kasa, A Condensing Enzyme And Drug Target From Mycobacterium Tuberculosis
J. Biol. Chem. V. 288 34190 2013
[
close entry info
]
Hetero Components
(5, 13)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: ISOPROPYL ALCOHOL (IPAa)
2b: ISOPROPYL ALCOHOL (IPAb)
2c: ISOPROPYL ALCOHOL (IPAc)
2d: ISOPROPYL ALCOHOL (IPAd)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
4a: (2R)-2-(HEXADECANOYLOXY)-3-{[(10R)... (M7Ua)
4b: (2R)-2-(HEXADECANOYLOXY)-3-{[(10R)... (M7Ub)
5a: (5R)-4-HYDROXY-5-METHYL-5-[(1E)-2-... (TLJa)
5b: (5R)-4-HYDROXY-5-METHYL-5-[(1E)-2-... (TLJb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
IPA
4
Ligand/Ion
ISOPROPYL ALCOHOL
3
K
2
Ligand/Ion
POTASSIUM ION
4
M7U
2
Ligand/Ion
(2R)-2-(HEXADECANOYLOXY)-3-{[(10R)-10-METHYLOCTADECANOYL]OXY}PROPYL PHOSPHATE
5
TLJ
2
Ligand/Ion
(5R)-4-HYDROXY-5-METHYL-5-[(1E)-2-METHYLBUTA-1,3-DIEN-1-YL]-3-PROPYLTHIOPHEN-2(5H)-ONE
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:18 , VAL A:19 , GLU A:30 , ARG A:363 , HOH A:2018 , HOH A:2381 , HOH A:2424
BINDING SITE FOR RESIDUE GOL A1417
02
AC2
SOFTWARE
TYR A:126 , ASN A:130 , HOH A:2425 , HOH B:2206
BINDING SITE FOR RESIDUE IPA A1418
03
AC3
SOFTWARE
ASP A:69 , TYR A:82 , M7U A:1424 , HOH A:2122
BINDING SITE FOR RESIDUE IPA A1419
04
AC4
SOFTWARE
SER A:211 , ARG A:214 , ALA A:215 , MET A:216 , ASP A:393 , HOH A:2275
BINDING SITE FOR RESIDUE GOL A1420
05
AC5
SOFTWARE
ASP A:283 , VAL A:285 , HOH A:2157 , HOH A:2312 , HOH A:2332 , HOH A:2426 , HOH A:2427 , ARG B:161 , HOH B:2144
BINDING SITE FOR RESIDUE IPA A1421
06
AC6
SOFTWARE
ASN A:309 , ALA A:310 , HIS A:311 , GLU A:354 , ASN A:399 , ASN A:400
BINDING SITE FOR RESIDUE K A1422
07
AC7
SOFTWARE
ASN B:309 , ALA B:310 , HIS B:311 , GLU B:354 , ASN B:399 , ASN B:400
BINDING SITE FOR RESIDUE K B1417
08
AC8
SOFTWARE
ALA B:18 , VAL B:19 , ILE B:29 , GLU B:30 , HOH B:2016 , HOH B:2309 , HOH B:2341
BINDING SITE FOR RESIDUE GOL B1418
09
AC9
SOFTWARE
SER B:211 , ARG B:214 , ALA B:215 , MET B:216
BINDING SITE FOR RESIDUE IPA B1419
10
BC1
SOFTWARE
GLN A:171 , PHE A:237 , VAL A:278 , ALA A:279 , PRO A:280 , HIS A:311 , THR A:313 , HIS A:345 , PHE A:402 , GLY A:403 , PHE A:404 , GLY A:406 , HOH A:2321 , HOH A:2356 , HOH A:2428
BINDING SITE FOR RESIDUE TLJ A1423
11
BC2
SOFTWARE
GLN B:171 , PHE B:237 , HIS B:276 , VAL B:278 , ALA B:279 , PRO B:280 , HIS B:311 , THR B:313 , HIS B:345 , PHE B:402 , GLY B:406 , HOH B:2285 , HOH B:2342
BINDING SITE FOR RESIDUE TLJ B1420
12
BC3
SOFTWARE
TYR A:82 , GLY A:115 , GLU A:120 , ALA A:170 , GLU A:199 , GLY A:200 , PRO A:201 , GLU A:203 , LEU A:205 , ALA A:209 , HIS A:345 , IPA A:1419 , VAL B:142 , ILE B:145
BINDING SITE FOR RESIDUE M7U A1424
13
BC4
SOFTWARE
VAL A:142 , ILE A:145 , GLY B:115 , GLU B:120 , ALA B:170 , GLU B:199 , GLY B:200 , PRO B:201 , GLU B:203 , ALA B:209 , HIS B:345 , ILE B:347
BINDING SITE FOR RESIDUE M7U B1421
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4c70a1 (A:2-259)
1b: SCOP_d4c70b1 (B:3-259)
1c: SCOP_d4c70b2 (B:260-416)
1d: SCOP_d4c70a2 (A:260-416)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Mycobacterium tuberculosis [TaxId: 83332]
(9)
1a
d4c70a1
A:2-259
1b
d4c70b1
B:3-259
1c
d4c70b2
B:260-416
1d
d4c70a2
A:260-416
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (288 KB)
Header - Asym.Unit
Biol.Unit 1 (277 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4C70
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help