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4C6Y
Biol. Unit 1
Info
Asym.Unit (281 KB)
Biol.Unit 1 (139 KB)
Biol.Unit 2 (135 KB)
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(1)
Title
:
ANCESTRAL PNCA (LAST COMMON ANCESTORS OF GRAM-POSITIVE AND GRAM-NEGATIVE BACTERIA) BETA-LACTAMASE CLASS A
Authors
:
J. A. Gavira, V. A. Risso, J. M. Sanchez-Ruiz
Date
:
19 Sep 13 (Deposition) - 16 Apr 14 (Release) - 28 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Antibiotic Resistance
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. A. Risso, J. A. Gavira, E. A. Gaucher, J. M. Sanchez-Ruiz
Phenotypic Comparisons Of Consensus Variants Versus Laboratory Resurrections Of Precambrian Proteins.
Proteins V. 82 887 2014
(for further references see the
PDB file header
)
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CHLORIDE ION (CLa)
3a: GLYCEROL (GOLa)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
5f: DI(HYDROXYETHYL)ETHER (PEGf)
5g: DI(HYDROXYETHYL)ETHER (PEGg)
5h: DI(HYDROXYETHYL)ETHER (PEGh)
5i: DI(HYDROXYETHYL)ETHER (PEGi)
5j: DI(HYDROXYETHYL)ETHER (PEGj)
5k: DI(HYDROXYETHYL)ETHER (PEGk)
5l: DI(HYDROXYETHYL)ETHER (PEGl)
5m: DI(HYDROXYETHYL)ETHER (PEGm)
5n: DI(HYDROXYETHYL)ETHER (PEGn)
5o: DI(HYDROXYETHYL)ETHER (PEGo)
5p: DI(HYDROXYETHYL)ETHER (PEGp)
5q: DI(HYDROXYETHYL)ETHER (PEGq)
5r: DI(HYDROXYETHYL)ETHER (PEGr)
5s: DI(HYDROXYETHYL)ETHER (PEGs)
5t: DI(HYDROXYETHYL)ETHER (PEGt)
5u: DI(HYDROXYETHYL)ETHER (PEGu)
6a: TETRAETHYLENE GLYCOL (PG4a)
6b: TETRAETHYLENE GLYCOL (PG4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
NA
-1
Ligand/Ion
SODIUM ION
5
PEG
13
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC7 (SOFTWARE)
22: DC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:83 , GLN A:86 , LYS A:88 , PHE A:151 , LYS A:215
BINDING SITE FOR RESIDUE PG4 A 291
02
AC2
SOFTWARE
ASP A:163 , GLU A:205 , GLN A:206 , HOH A:2136
BINDING SITE FOR RESIDUE PEG A 292
03
AC3
SOFTWARE
ARG A:204 , ALA A:272 , GLU A:273
BINDING SITE FOR RESIDUE NA A 293
04
AC4
SOFTWARE
ILE A:155 , ASP A:157 , ALA A:185 , ALA A:188 , THR A:189 , HOH A:2119 , HOH A:2206
BINDING SITE FOR RESIDUE PEG A 294
05
AC5
SOFTWARE
PRO A:107 , LYS A:111 , HOH A:2096 , HOH A:2098
BINDING SITE FOR RESIDUE PEG A 295
06
AC6
SOFTWARE
ARG A:222 , LEU A:225 , PRO A:226 , TRP A:229
BINDING SITE FOR RESIDUE ACT A 296
07
AC7
SOFTWARE
ARG A:39 , SER A:40 , GLU A:281 , PEG A:298
BINDING SITE FOR RESIDUE PEG A 297
08
AC8
SOFTWARE
ALA A:274 , PEG A:297
BINDING SITE FOR RESIDUE PEG A 298
09
AC9
SOFTWARE
ARG A:43 , ARG A:65 , PRO A:174 , GLY A:175 , ASP A:176 , PRO A:177 , HOH A:2020 , HOH A:2209
BINDING SITE FOR RESIDUE PEG A 299
10
BC1
SOFTWARE
SER A:154 , LYS A:192 , GLN A:269 , HOH A:2145
BINDING SITE FOR RESIDUE PEG A 300
11
BC2
SOFTWARE
ARG A:56 , ILE A:57 , ALA A:58 , ARG A:184 , NA A:308 , HOH A:2139
BINDING SITE FOR RESIDUE PEG A 301
12
BC3
SOFTWARE
GLY A:87 , ARG A:90 , ARG A:93 , HOH A:2065
BINDING SITE FOR RESIDUE PEG A 302
13
BC4
SOFTWARE
ARG A:94 , GLY A:116 , GLU A:121 , GLU B:31 , GLU B:35
BINDING SITE FOR RESIDUE PEG A 303
14
BC5
SOFTWARE
ARG A:93 , ILE A:95 , LEU A:137 , ALA A:141 , ALA A:227 , ARG A:230 , HOH A:2112
BINDING SITE FOR RESIDUE PEG A 304
15
BC6
SOFTWARE
LYS A:219
BINDING SITE FOR RESIDUE PEG A 305
16
BC7
SOFTWARE
PRO A:167
BINDING SITE FOR RESIDUE GOL A 306
17
BC8
SOFTWARE
SER A:70 , SER A:130 , ASN A:132 , THR A:235 , GLY A:236 , THR A:237 , HOH A:2052
BINDING SITE FOR RESIDUE PEG A 307
18
BC9
SOFTWARE
ARG A:56 , ARG A:184 , PEG A:301
BINDING SITE FOR RESIDUE NA A 308
19
CC1
SOFTWARE
HOH A:2200 , VAL B:48 , ARG B:56 , ILE B:57 , ARG B:184 , ALA B:188 , HOH B:2069 , HOH B:2093
BINDING SITE FOR RESIDUE PEG B 291
20
CC2
SOFTWARE
ALA A:257 , ARG B:65 , HOH B:2065
BINDING SITE FOR RESIDUE CL B 292
21
CC7
SOFTWARE
LYS A:111 , HIS A:112 , LYS B:38
BINDING SITE FOR RESIDUE PEG B 297
22
DC1
SOFTWARE
THR A:53 , ARG A:55 , ARG B:161
BINDING SITE FOR RESIDUE ACT B 300
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (281 KB)
Header - Asym.Unit
Biol.Unit 1 (139 KB)
Header - Biol.Unit 1
Biol.Unit 2 (135 KB)
Header - Biol.Unit 2
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