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4C5J
Asym. Unit
Info
Asym.Unit (391 KB)
Biol.Unit 1 (194 KB)
Biol.Unit 2 (195 KB)
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(1)
Title
:
STRUCTURE OF THE PYRIDOXAL KINASE FROM STAPHYLOCOCCUS AUREUS
Authors
:
M. Nodwell, F. Alte, S. A. Sieber, S. Schneider
Date
:
12 Sep 13 (Deposition) - 19 Mar 14 (Release) - 16 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Transferase, Ribokinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. B. Nodwell, M. F. Koch, F. Alte, S. Schneider, S. A. Sieber
A Subfamily Of Bacterial Ribokinases Utilizes A Hemithioacetal For Pyridoxal Phosphate Salvage.
J. Am. Chem. Soc. V. 136 4992 2014
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
14
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY B:211 , ALA B:212 , GLY B:213 , CYS B:214 , HOH B:2224 , HOH B:2274 , HOH B:2275
BINDING SITE FOR RESIDUE SO4 B1277
02
AC2
SOFTWARE
GLY A:211 , ALA A:212 , GLY A:213 , CYS A:214 , HOH A:2156 , HOH A:2229 , HOH A:2290
BINDING SITE FOR RESIDUE SO4 A1277
03
AC3
SOFTWARE
LYS B:5 , GLY B:72 , ASN B:98 , HOH B:2014 , HOH B:2112 , HOH B:2118
BINDING SITE FOR RESIDUE SO4 B1278
04
AC4
SOFTWARE
LEU B:69 , ARG B:89 , GLU B:92 , VAL B:93 , ALA B:96 , HOH B:2276
BINDING SITE FOR RESIDUE SO4 B1279
05
AC5
SOFTWARE
LYS B:179 , ALA B:180 , HOH B:2169 , HOH B:2172 , HOH B:2193 , HOH B:2277
BINDING SITE FOR RESIDUE SO4 B1280
06
AC6
SOFTWARE
GLY C:211 , ALA C:212 , GLY C:213 , CYS C:214 , HOH C:2168
BINDING SITE FOR RESIDUE SO4 C1277
07
AC7
SOFTWARE
TYR A:223 , LYS A:228 , TYR A:263 , HOH A:2235 , HOH A:2251 , HOH A:2292 , HOH A:2293 , HOH A:2294 , HOH A:2296 , PRO C:55
BINDING SITE FOR RESIDUE SO4 A1278
08
AC8
SOFTWARE
GLY C:178 , LYS C:179 , ALA C:180 , HOH C:2128 , HOH C:2130 , HOH C:2213
BINDING SITE FOR RESIDUE SO4 C1278
09
AC9
SOFTWARE
SER C:229 , LYS C:231 , GLU C:232 , HOH C:2159 , HOH C:2180
BINDING SITE FOR RESIDUE SO4 C1279
10
BC1
SOFTWARE
GLY D:211 , ALA D:212 , GLY D:213 , CYS D:214 , HOH D:2099 , HOH D:2161 , HOH D:2205
BINDING SITE FOR RESIDUE SO4 D1277
11
BC2
SOFTWARE
LEU D:69 , ARG D:89 , VAL D:93 , ALA D:96 , HOH D:2064
BINDING SITE FOR RESIDUE SO4 D1278
12
BC3
SOFTWARE
GLY D:72 , ASN D:98 , HOH D:2069
BINDING SITE FOR RESIDUE SO4 D1279
13
BC4
SOFTWARE
GLY D:178 , LYS D:179 , ALA D:180 , HOH D:2110 , HOH D:2113 , HOH D:2139 , HOH D:2206
BINDING SITE FOR RESIDUE SO4 D1280
14
BC5
SOFTWARE
LYS A:5 , GLY A:72 , ASN A:98 , HOH A:2009 , HOH A:2111
BINDING SITE FOR RESIDUE SO4 A1279
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4c5ja_ (A:)
1b: SCOP_d4c5jb_ (B:)
1c: SCOP_d4c5jc_ (C:)
1d: SCOP_d4c5jd_ (D:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribokinase-like
(226)
Superfamily
:
Ribokinase-like
(189)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Staphylococcus aureus [TaxId: 158878]
(1)
1a
d4c5ja_
A:
1b
d4c5jb_
B:
1c
d4c5jc_
C:
1d
d4c5jd_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (391 KB)
Header - Asym.Unit
Biol.Unit 1 (194 KB)
Header - Biol.Unit 1
Biol.Unit 2 (195 KB)
Header - Biol.Unit 2
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