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4C5C
Asym. Unit
Info
Asym.Unit (210 KB)
Biol.Unit 1 (202 KB)
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Title
:
THE X-RAY CRYSTAL STRUCTURE OF D-ALANYL-D-ALANINE LIGASE IN COMPLEX WITH ADP AND D-ALA-D-ALA
Authors
:
S. Batson, V. Majce, A. J. Lloyd, D. Rea, C. W. G. Fishwick, K. J. Simmons, D. I. Roper
Date
:
10 Sep 13 (Deposition) - 21 Jan 15 (Release) - 21 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ligase, Ddlb
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Batson, V. Majce, A. J. Lloyd, D. Rea, C. W. G. Fishwick, K. J. Simmons V. Fulop, D. I. Roper
D-Cycloserine Inhibition Occurs By A Novel Phosphoryl Intermediate: Prospects For Novel Antimicrobials Without Psychotic Side Effects.
To Be Published
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: D-ALANINE (DALa)
2b: D-ALANINE (DALb)
2c: D-ALANINE (DALc)
2d: D-ALANINE (DALd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
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Label:
No.
Name
Count
Type
Full Name
1
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
DAL
4
Ligand/Ion
D-ALANINE
3
GOL
2
Ligand/Ion
GLYCEROL
4
MG
7
Ligand/Ion
MAGNESIUM ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:97 , ILE A:142 , LYS A:144 , GLU A:148 , GLY A:149 , SER A:150 , SER A:151 , MET A:154 , GLU A:180 , LYS A:181 , TRP A:182 , LEU A:183 , GLU A:187 , PHE A:209 , TYR A:210 , LYS A:215 , ARG A:255 , ASP A:257 , MET A:259 , LEU A:269 , GLU A:270 , ASN A:272 , DAL A:311 , DAL A:312 , MG A:1313 , MG A:1314 , HOH A:2194 , HOH A:2197 , HOH A:2263 , HOH A:2272
BINDING SITE FOR RESIDUE ATP A 310
02
AC2
SOFTWARE
GLU A:270 , ASN A:272 , ATP A:310 , MG A:1314 , HOH A:2194
BINDING SITE FOR RESIDUE MG A1313
03
AC3
SOFTWARE
ASP A:257 , GLU A:270 , ATP A:310 , MG A:1313 , HOH A:2272
BINDING SITE FOR RESIDUE MG A1314
04
AC4
SOFTWARE
LYS B:97 , ILE B:142 , LYS B:144 , GLU B:148 , GLY B:149 , SER B:150 , SER B:151 , MET B:154 , GLU B:180 , LYS B:181 , TRP B:182 , LEU B:183 , GLU B:187 , PHE B:209 , TYR B:210 , LYS B:215 , ARG B:255 , ASP B:257 , MET B:259 , LEU B:269 , GLU B:270 , ASN B:272 , DAL B:311 , DAL B:312 , MG B:1307 , MG B:1308 , HOH B:2165 , HOH B:2166 , HOH B:2225 , HOH B:2236
BINDING SITE FOR RESIDUE ATP B 310
05
AC5
SOFTWARE
GLU B:270 , ASN B:272 , ATP B:310 , MG B:1308 , HOH B:2165
BINDING SITE FOR RESIDUE MG B1307
06
AC6
SOFTWARE
ASP B:257 , GLU B:270 , ATP B:310 , MG B:1307 , HOH B:2236
BINDING SITE FOR RESIDUE MG B1308
07
AC7
SOFTWARE
HOH B:2181 , HOH B:2182 , HOH B:2186 , HOH B:2187 , HOH B:2307 , HOH B:2308
BINDING SITE FOR RESIDUE MG B1310
08
AC8
SOFTWARE
HIS A:280 , HOH A:2273 , HOH A:2278 , HOH A:2322 , HOH A:2323 , HOH A:2343
BINDING SITE FOR RESIDUE MG A1315
09
AC9
SOFTWARE
HIS B:280 , HOH B:2238 , HOH B:2240 , HOH B:2241 , HOH B:2286 , HOH B:2306
BINDING SITE FOR RESIDUE MG B1309
10
BC1
SOFTWARE
ASN A:21 , TYR A:212 , ARG A:288 , HOH A:2274 , HOH A:2327 , HOH A:2344
BINDING SITE FOR RESIDUE GOL A1316
11
BC2
SOFTWARE
LEU A:20 , PRO A:39 , ASP A:41 , ASP A:165 , ARG A:168 , HOH A:2046 , HOH A:2213 , HOH A:2218
BINDING SITE FOR RESIDUE GOL A1317
12
BC3
SOFTWARE
GLU A:15 , HIS A:63 , SER A:150 , TYR A:216 , ARG A:255 , GLY A:276 , SER A:281 , LEU A:282 , ATP A:310 , HOH A:2095 , HOH A:2308
BINDING SITE FOR DI-PEPTIDE DAL A 311 AND DAL A 312
13
BC4
SOFTWARE
GLU B:15 , HIS B:63 , SER B:150 , TYR B:216 , ARG B:255 , GLY B:276 , SER B:281 , LEU B:282 , ATP B:310 , HOH B:2018 , HOH B:2081 , HOH B:2274
BINDING SITE FOR DI-PEPTIDE DAL B 311 AND DAL B 312
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (210 KB)
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