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4C5A
Asym. Unit
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Asym.Unit (205 KB)
Biol.Unit 1 (198 KB)
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(1)
Title
:
THE X-RAY CRYSTAL STRUCTURES OF D-ALANYL-D-ALANINE LIGASE IN COMPLEX ADP AND D-CYCLOSERINE PHOSPHATE
Authors
:
S. Batson, V. Majce, A. J. Lloyd, D. Rea, C. W. G. Fishwick, K. J. Simmons, D. I. Roper
Date
:
10 Sep 13 (Deposition) - 21 Jan 15 (Release) - 21 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Ligase, Ddlb, Antibiotic
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Batson, V. Majce, A. J. Lloyd, D. Rea, C. W. G. Fishwick, K. J. Simmons V. Fulop, D. I. Roper
D-Cycloserine Inhibition Occurs By A Novel Phosphoryl Intermediate: Prospects For Novel Antimicrobials Without Psychotic Side Effects.
To Be Published
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: [(4R)-4-AZANYL-4,5-DIHYDRO-1,2-OXA... (DS0a)
2b: [(4R)-4-AZANYL-4,5-DIHYDRO-1,2-OXA... (DS0b)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
DS0
2
Ligand/Ion
[(4R)-4-AZANYL-4,5-DIHYDRO-1,2-OXAZOL-3-YL]DIHYDROGEN PHOSPHATE
3
GOL
2
Ligand/Ion
GLYCEROL
4
MG
4
Ligand/Ion
MAGNESIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:97 , ILE A:142 , LYS A:144 , GLU A:148 , GLY A:149 , SER A:150 , SER A:151 , MET A:154 , GLU A:180 , LYS A:181 , TRP A:182 , LEU A:183 , GLU A:187 , PHE A:209 , TYR A:210 , LYS A:215 , ASP A:257 , MET A:259 , LEU A:269 , GLU A:270 , DS0 A:311 , MG A:330 , MG A:331 , HOH A:2135 , HOH A:2137 , HOH A:2238
BINDING SITE FOR RESIDUE ADP A 310
02
AC2
SOFTWARE
GLU A:15 , GLY A:149 , SER A:150 , LYS A:215 , TYR A:216 , ARG A:255 , ASP A:257 , GLU A:270 , ASN A:272 , PRO A:275 , GLY A:276 , ADP A:310 , MG A:330 , MG A:331 , HOH A:2028 , HOH A:2080 , HOH A:2190
BINDING SITE FOR RESIDUE DS0 A 311
03
AC3
SOFTWARE
GLU A:270 , ASN A:272 , ADP A:310 , DS0 A:311 , MG A:331 , HOH A:2135
BINDING SITE FOR RESIDUE MG A 330
04
AC4
SOFTWARE
ASP A:257 , GLU A:270 , ADP A:310 , DS0 A:311 , MG A:330
BINDING SITE FOR RESIDUE MG A 331
05
AC5
SOFTWARE
LYS B:97 , ILE B:142 , LYS B:144 , GLU B:148 , GLY B:149 , SER B:150 , SER B:151 , MET B:154 , GLU B:180 , LYS B:181 , TRP B:182 , LEU B:183 , GLU B:187 , PHE B:209 , TYR B:210 , LYS B:215 , ASP B:257 , MET B:259 , GLU B:270 , DS0 B:311 , MG B:330 , MG B:331 , HOH B:2059 , HOH B:2077 , HOH B:2101
BINDING SITE FOR RESIDUE ADP B 310
06
AC6
SOFTWARE
GLU B:15 , HIS B:63 , GLY B:149 , SER B:150 , LYS B:215 , TYR B:216 , ARG B:255 , ASP B:257 , GLU B:270 , ASN B:272 , PRO B:275 , GLY B:276 , ADP B:310 , MG B:330 , MG B:331 , HOH B:2006 , HOH B:2020 , HOH B:2077 , HOH B:2078
BINDING SITE FOR RESIDUE DS0 B 311
07
AC7
SOFTWARE
GLU B:270 , ASN B:272 , ADP B:310 , DS0 B:311 , MG B:331
BINDING SITE FOR RESIDUE MG B 330
08
AC8
SOFTWARE
ASP B:257 , GLU B:270 , ADP B:310 , DS0 B:311 , MG B:330 , HOH B:2077
BINDING SITE FOR RESIDUE MG B 331
09
AC9
SOFTWARE
GLU A:17 , VAL A:18 , TYR A:212 , LEU A:217 , ARG A:288 , HOH A:2034 , HOH A:2035 , HOH A:2239
BINDING SITE FOR RESIDUE GOL A1307
10
BC1
SOFTWARE
ASP A:41 , GLU A:44 , ASN A:161 , GLN A:164 , ASP A:165 , ARG A:168
BINDING SITE FOR RESIDUE GOL A1308
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SAPs(SNPs)/Variants
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Exons
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (205 KB)
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