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4C56
Biol. Unit 2
Info
Asym.Unit (337 KB)
Biol.Unit 1 (170 KB)
Biol.Unit 2 (168 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE COMPLEX BETWEEN STAPHYLOCOCCAL ENTEROTOXIN B, T CELL RECEPTOR AND MAJOR HISTOCOMPATIBILITY COMPLEX CLASS II
Authors
:
K. E. J. Rodstrom, K. Elbing, K. Lindkvist-Petersson
Date
:
10 Sep 13 (Deposition) - 23 Jul 14 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: G,H,I,J,K,L (1x)
Biol. Unit 2: A,B,C,D,E,F (1x)
Keywords
:
Immune System-Toxin Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. E. J. Rodstrom, K. Elbing, K. Lindkvist-Petersson
Structure Of The Superantigen Staphylococcal Enterotoxin B In Complex With Tcr And Peptide-Mhc Demonstrates Absence Of Tcr-Peptide Contacts.
J. Immunol. V. 193 1998 2014
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG E:166 , GLU E:169
BINDING SITE FOR RESIDUE GOL E1191
[
close Site info
]
SAPs(SNPs)/Variants
(25, 25)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_033379 (R4K, chain E, )
02: VAR_033380 (R4Q, chain E, )
03: VAR_016740 (Q10E, chain E, )
04: VAR_033381 (S37Y, chain E, )
05: VAR_016741 (G45R, chain E, )
06: VAR_033382 (Y47F, chain E, )
07: VAR_033383 (Y60S, chain E, )
08: VAR_016710 (L67I, chain E, )
09: VAR_016711 (Q70D, chain E, )
10: VAR_033384 (Q70E, chain E, )
11: VAR_033385 (Q70H, chain E, )
12: VAR_016742 (R71A, chain E, )
13: VAR_016712 (R71E, chain E, )
14: VAR_033386 (A73G, chain E, )
15: VAR_033387 (A74E, chain E, )
16: VAR_016713 (T77N, chain E, )
17: VAR_033388 (Y78H, chain E, )
18: VAR_016714 (V85A, chain E, )
19: VAR_016715 (G86V, chain E, )
20: VAR_033389 (G135D, chain E, )
21: VAR_033390 (A140T, chain E, )
22: VAR_033391 (V142M, chain E, )
23: VAR_033392 (Q149H, chain E, )
24: VAR_033393 (R166Q, chain E, )
25: VAR_033394 (T181I, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_033379
R
33
K
2B11_HUMAN
Polymorphism
34716432
E
R
4
K
02
UniProt
VAR_033380
R
33
Q
2B11_HUMAN
Polymorphism
34716432
E
R
4
Q
03
UniProt
VAR_016740
Q
39
E
2B11_HUMAN
Polymorphism
---
E
Q
10
E
04
UniProt
VAR_033381
S
66
Y
2B11_HUMAN
Polymorphism
16822820
E
S
37
Y
05
UniProt
VAR_016741
G
74
R
2B11_HUMAN
Polymorphism
---
E
G
45
R
06
UniProt
VAR_033382
Y
76
F
2B11_HUMAN
Polymorphism
1060346
E
Y
47
F
07
UniProt
VAR_033383
Y
89
S
2B11_HUMAN
Polymorphism
36074728
E
Y
60
S
08
UniProt
VAR_016710
L
96
I
2B11_HUMAN
Polymorphism
---
E
L
67
I
09
UniProt
VAR_016711
Q
99
D
2B11_HUMAN
Polymorphism
---
E
Q
70
D
10
UniProt
VAR_033384
Q
99
E
2B11_HUMAN
Polymorphism
17881965
E
Q
70
E
11
UniProt
VAR_033385
Q
99
H
2B11_HUMAN
Polymorphism
17879599
E
Q
70
H
12
UniProt
VAR_016742
R
100
A
2B11_HUMAN
Polymorphism
---
E
R
71
A
13
UniProt
VAR_016712
R
100
E
2B11_HUMAN
Polymorphism
---
E
R
71
E
14
UniProt
VAR_033386
A
102
G
2B11_HUMAN
Polymorphism
17878857
E
A
73
G
15
UniProt
VAR_033387
A
103
E
2B11_HUMAN
Polymorphism
16822805
E
A
74
E
16
UniProt
VAR_016713
T
106
N
2B11_HUMAN
Polymorphism
16822752
E
T
77
N
17
UniProt
VAR_033388
Y
107
H
2B11_HUMAN
Polymorphism
16822512
E
Y
78
H
18
UniProt
VAR_016714
V
114
A
2B11_HUMAN
Polymorphism
17424145
E
V
85
A
19
UniProt
VAR_016715
G
115
V
2B11_HUMAN
Polymorphism
2230810
E
G
86
V
20
UniProt
VAR_033389
G
164
D
2B11_HUMAN
Polymorphism
1059633
E
G
135
D
21
UniProt
VAR_033390
A
169
T
2B11_HUMAN
Polymorphism
2308768
E
A
140
T
22
UniProt
VAR_033391
V
171
M
2B11_HUMAN
Polymorphism
701829
E
V
142
M
23
UniProt
VAR_033392
Q
178
H
2B11_HUMAN
Polymorphism
701830
E
Q
149
H
24
UniProt
VAR_033393
R
195
Q
2B11_HUMAN
Polymorphism
3205588
E
R
166
Q
25
UniProt
VAR_033394
T
210
I
2B11_HUMAN
Polymorphism
17423930
E
T
181
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 4)
Info
All PROSITE Patterns/Profiles
1: STAPH_STREP_TOXIN_1 (C:115-124)
2: STAPH_STREP_TOXIN_2 (C:152-175)
3: IG_MHC (D:161-167)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
STAPH_STREP_TOXIN_1
PS00277
Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.
ETXB_STAAU
142-151
1
C:115-124
-
2
STAPH_STREP_TOXIN_2
PS00278
Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.
ETXB_STAAU
179-202
1
C:152-175
-
3
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
DRA_HUMAN
186-192
1
D:161-167
-
2B11_HUMAN
200-206
1
E:171-177
-
[
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (337 KB)
Header - Asym.Unit
Biol.Unit 1 (170 KB)
Header - Biol.Unit 1
Biol.Unit 2 (168 KB)
Header - Biol.Unit 2
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