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4C55
Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SERUM-DERIVED HUMAN IGG4 FC
Authors
:
A. M. Davies, T. Rispens, P. Ooijevaar-Deheer, H. J. Gould, R. Jefferis R. C. Aalberse, B. J. Sutton
Date
:
10 Sep 13 (Deposition) - 13 Nov 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Immune System, Igg, Antibody, Immunoglobulin, Igg1
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. M. Davies, T. Rispens, P. Ooijevaar-Deheer, H. J. Gould, R. Jefferis, R. C. Aalberse, B. J. Sutton
Structural Determinants Of Unique Properties Of Human Igg4-Fc
J. Mol. Biol. V. 426 630 2014
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Hetero Components
(7, 22)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
3a: ALPHA-L-FUCOSE (FUCa)
4a: BETA-D-GALACTOSE (GALa)
4b: BETA-D-GALACTOSE (GALb)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
6a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
6b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
5
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
6
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER B:239 , VAL B:240 , ILE B:332 , LYS B:334
BINDING SITE FOR RESIDUE MES B1444
2
AC2
SOFTWARE
SER A:239 , VAL A:240 , ILE A:332 , LYS A:334
BINDING SITE FOR RESIDUE MES A1445
3
AC3
SOFTWARE
ILE B:377 , THR B:393 , THR B:394 , HOH B:2013
BINDING SITE FOR RESIDUE EDO B1445
4
AC4
SOFTWARE
ILE A:377 , THR A:394 , PRO A:396 , HOH A:2033
BINDING SITE FOR RESIDUE EDO A1446
5
AC5
SOFTWARE
TYR A:391 , LYS A:392 , THR A:393
BINDING SITE FOR RESIDUE EDO A1447
6
AC6
SOFTWARE
PHE A:243 , PRO A:244 , PRO A:245 , LYS A:246 , GLU A:258 , THR A:260 , VAL A:264 , ASP A:265 , GLN A:295 , ASN A:297 , THR A:299 , ARG A:301 , HOH A:2003 , HOH A:2007 , HOH A:2018 , HOH A:2051 , HOH A:2052 , HOH A:2053 , HOH A:2054 , ASN B:384 , MAN B:906
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 901 THROUGH FUC A 909 BOUND TO ASN A 297
7
AC7
SOFTWARE
ASN A:384 , MAN A:906 , HOH A:2052 , PHE B:241 , PHE B:243 , PRO B:244 , LYS B:246 , GLU B:258 , THR B:260 , VAL B:264 , ASP B:265 , GLN B:295 , ASN B:297 , THR B:299 , ARG B:301 , LYS B:334
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 901 THROUGH GAL B 908 BOUND TO ASN B 297
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (-|A:423-429,B:423-429)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGHG4_HUMAN
81-87
303-309
2
-
A:423-429
B:423-429
[
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Exons
(2, 4)
Info
All Exons
Exon 1.3 (A:237-341 | B:238-341)
Exon 1.4 (A:341-444 | B:341-443)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000390543
1
ENSE00001899375
chr14:
106092403-106092109
295
IGHG4_HUMAN
1-99
99
0
-
-
1.2
ENST00000390543
2
ENSE00001619160
chr14:
106091716-106091681
36
IGHG4_HUMAN
99-111
13
0
-
-
1.3
ENST00000390543
3
ENSE00001594509
chr14:
106091562-106091233
330
IGHG4_HUMAN
111-221
111
2
A:237-341
B:238-341
105
104
1.4
ENST00000390543
4
ENSE00001812352
chr14:
106091135-106090687
449
IGHG4_HUMAN
221-327
107
2
A:341-444
B:341-443
104
103
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (153 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (73 KB)
Header - Biol.Unit 2
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