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4C50
Asym. Unit
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Asym.Unit (232 KB)
Biol.Unit 1 (226 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALASE-PEROXIDASE (KATG) D137S MUTANT FROM MYCOBACTERIUM TUBERCULOSIS
Authors
:
H. -P. Hersleth, X. Zhao, R. S. Magliozzo, K. K. Andersson
Date
:
10 Sep 13 (Deposition) - 13 Nov 13 (Release) - 27 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
X. Zhao, H. P. Hersleth, J. Zhu, K. K. Andersson, R. S. Magliozzo
Access Channel Residues Ser315 And Asp137 In Mycobacterium Tuberculosis Catalase-Peroxidase (Katg) Control Peroxidatic Activation Of The Pro-Drug Isoniazid.
Chem. Commun. (Camb. ) V. 49 11650 2013
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: ALPHA-D-GLUCOSE (GLCa)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
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Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
GLC
1
Ligand/Ion
ALPHA-D-GLUCOSE
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:94 , PRO A:100 , LEU A:101 , ARG A:104 , TRP A:107 , VAL A:230 , LEU A:265 , ILE A:266 , GLY A:269 , HIS A:270 , PHE A:272 , GLY A:273 , LYS A:274 , THR A:275 , HIS A:276 , THR A:314 , SER A:315 , TRP A:321 , THR A:380 , HOH A:2006 , HOH A:2007
BINDING SITE FOR RESIDUE HEM A1741
2
AC2
SOFTWARE
PRO B:100 , ARG B:104 , TRP B:107 , LEU B:265 , ILE B:266 , GLY B:269 , HIS B:270 , GLY B:273 , LYS B:274 , THR B:275 , HIS B:276 , THR B:314 , SER B:315 , TRP B:321 , THR B:380 , HOH B:2005 , HOH B:2007 , HOH B:2008 , HOH B:2009
BINDING SITE FOR RESIDUE HEM B1741
3
AC3
SOFTWARE
HIS A:447 , GLN A:525 , LYS A:537 , THR A:572 , ASP A:573
BINDING SITE FOR RESIDUE GLC A1742
4
AC4
SOFTWARE
ASN A:602 , LEU A:604
BINDING SITE FOR RESIDUE ACT A1743
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SAPs(SNPs)/Variants
(7, 14)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_KATG_MYCTU_001 (W300G, chain A/B, )
2: VAR_KATG_MYCTU_002 (S315T, chain A/B, )
3: VAR_KATG_MYCTU_003 (R463L, chain A/B, )
4: VAR_KATG_MYCTU_004 (P501A, chain A/B, )
5: VAR_KATG_MYCTU_005 (Q525P, chain A/B, )
6: VAR_KATG_MYCTU_006 (L587P, chain A/B, )
7: VAR_KATG_MYCTU_007 (S700P, chain A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_KATG_MYCTU_001
*
W
300
G
KATG_MYCTU
---
---
A/B
W
300
G
2
UniProt
VAR_KATG_MYCTU_002
*
S
315
T
KATG_MYCTU
---
---
A/B
S
315
T
3
UniProt
VAR_KATG_MYCTU_003
*
R
463
L
KATG_MYCTU
---
---
A/B
R
463
L
4
UniProt
VAR_KATG_MYCTU_004
*
P
501
A
KATG_MYCTU
---
---
A/B
P
501
A
5
UniProt
VAR_KATG_MYCTU_005
*
Q
525
P
KATG_MYCTU
---
---
A/B
Q
525
P
6
UniProt
VAR_KATG_MYCTU_006
*
L
587
P
KATG_MYCTU
---
---
A/B
L
587
P
7
UniProt
VAR_KATG_MYCTU_007
*
S
700
P
KATG_MYCTU
---
---
A/B
S
700
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_2 (A:99-110,B:99-110,A:99-110,B:99-11...)
2: PEROXIDASE_1 (A:262-272,B:262-272,A:262-272,B:26...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_2
PS00436
Peroxidases active site signature.
KATG_MYCTO
99-110
2
A:99-110
B:99-110
KATG_MYCTU
99-110
2
A:99-110
B:99-110
2
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
KATG_MYCTO
262-272
2
A:262-272
B:262-272
KATG_MYCTU
262-272
2
A:262-272
B:262-272
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4c50a1 (A:25-432)
1b: SCOP_d4c50a2 (A:433-740)
1c: SCOP_d4c50b1 (B:25-432)
1d: SCOP_d4c50b2 (B:433-740)
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Class
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All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
Mycobacterium tuberculosis [TaxId: 83332]
(2)
1a
d4c50a1
A:25-432
1b
d4c50a2
A:433-740
1c
d4c50b1
B:25-432
1d
d4c50b2
B:433-740
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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