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4C3J
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Biol.Unit 1, α-C (1.5 MB)
Biol.Unit 1 (1.5 MB)
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(1)
Title
:
STRUCTURE OF 14-SUBUNIT RNA POLYMERASE I AT 3.35 A RESOLUTION, CRYSTAL FORM C2-90
Authors
:
C. Fernandez-Tornero, M. Moreno-Morcillo, U. J. Rashid, N. M. I. Taylo F. M. Ruiz, T. Gruene, P. Legrand, U. Steuerwald, C. W. Muller
Date
:
24 Aug 13 (Deposition) - 23 Oct 13 (Release) - 06 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Keywords
:
Transcription
(Keyword Search:
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Reference
:
C. Fernandez-Tornero, M. Moreno-Morcillo, U. J. Rashid, N. M. I. Taylor, F. M. Ruiz, T. Gruene, P. Legrand, U. Steuerwald, C. W. Muller
Crystal Structure Of The 14-Subunit Rna Polymerase I
Nature V. 502 644 2013
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Hetero Components
(1, 7)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
7
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:102 , CYS A:105 , CYS A:233 , CYS A:236
BINDING SITE FOR RESIDUE ZN A2664
2
AC2
SOFTWARE
CYS A:62 , CYS A:65 , CYS A:72 , HIS A:75
BINDING SITE FOR RESIDUE ZN A2665
3
AC3
SOFTWARE
CYS B:1104 , CYS B:1107 , CYS B:1128 , CYS B:1131
BINDING SITE FOR RESIDUE ZN B2204
4
AC4
SOFTWARE
CYS L:31 , CYS L:34 , CYS L:48 , CYS L:51
BINDING SITE FOR RESIDUE ZN L1071
5
AC5
SOFTWARE
CYS J:7 , CYS J:10 , CYS J:45 , CYS J:46
BINDING SITE FOR RESIDUE ZN J1070
6
AC6
SOFTWARE
CYS I:10 , CYS I:13 , CYS I:30 , CYS I:33
BINDING SITE FOR RESIDUE ZN I1126
7
AC7
SOFTWARE
CYS I:86 , GLN I:88 , CYS I:89 , CYS I:114 , SER I:116
BINDING SITE FOR RESIDUE ZN I1127
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(9, 9)
Info
All PROSITE Patterns/Profiles
1: RNA_POL_N_8KD (J:2-11)
2: RNA_POL_M_15KD (I:9-33)
3: RNA_POL_L_13KD (K:65-96)
4: RNA_POL_D_30KD (C:65-105)
5: ZF_TFIIS_2 (I:82-122)
6: ZF_TFIIS_1 (I:86-121)
7: RNA_POL_K_14KD (F:86-100)
8: RNA_POL_H_23KD (E:147-160)
9: RNA_POL_BETA (B:914-926)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNA_POL_N_8KD
PS01112
RNA polymerases N / 8 Kd subunits signature.
RPAB5_YEAST
2-11
1
J:2-11
2
RNA_POL_M_15KD
PS01030
RNA polymerases M / 15 Kd subunits signature.
RPA12_YEAST
9-33
1
I:9-33
3
RNA_POL_L_13KD
PS01154
RNA polymerases L / 13 to 16 Kd subunits signature.
RPAC2_YEAST
65-96
1
K:65-96
4
RNA_POL_D_30KD
PS00446
RNA polymerases D / 30 to 40 Kd subunits signature.
RPAC1_YEAST
65-105
1
C:65-105
5
ZF_TFIIS_2
PS51133
Zinc finger TFIIS-type profile.
RPA12_YEAST
82-122
1
I:82-122
6
ZF_TFIIS_1
PS00466
Zinc finger TFIIS-type signature.
RPA12_YEAST
86-121
1
I:86-121
7
RNA_POL_K_14KD
PS01111
RNA polymerases K / 14 to 18 Kd subunits signature.
RPAB2_YEAST
86-100
1
F:86-100
8
RNA_POL_H_23KD
PS01110
RNA polymerases H / 23 Kd subunits signature.
RPAB1_YEAST
147-160
1
E:147-160
9
RNA_POL_BETA
PS01166
RNA polymerases beta chain signature.
RPA2_YEAST
914-926
1
B:914-926
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Exons
(6, 6)
Info
All Exons
Exon 1.1 (E:1-215)
Exon 2.1 (D:12-100 (gaps))
Exon 3.1 (L:26-70)
Exon 4.1 (J:1-69)
Exon 5.1 (G:8-316 (gaps))
Exon 6.2 (F:55-154)
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/-
03: Boundary -/2.1
04: Boundary 2.1/-
05: Boundary -/3.1
06: Boundary 3.1/-
07: Boundary -/4.1
08: Boundary 4.1/-
09: Boundary -/5.1
10: Boundary 5.1/-
11: Boundary 6.1/6.2
12: Boundary 6.2/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YBR154C
1
YBR154C.1
II:549003-548356
648
RPAB1_YEAST
1-215
215
1
E:1-215
215
2.1
YDR156W
1
YDR156W.1
IV:769523-769936
414
RPA14_YEAST
1-137
137
1
D:12-100 (gaps)
89
3.1
YHR143W-A
1
YHR143W-A.1
VIII:387236-387448
213
RPAB4_YEAST
1-70
70
1
L:26-70
45
4.1
YOR210W
1
YOR210W.1
XV:738321-738533
213
RPAB5_YEAST
1-70
70
1
J:1-69
69
5.1
YOR340C
1
YOR340C.1
XV:960179-959199
981
RPA43_YEAST
1-326
326
1
G:8-316 (gaps)
309
6.1
YPR187W
1
YPR187W.1
XVI:911253-911272
20
RPAB2_YEAST
1-7
7
0
-
-
6.2
YPR187W
2
YPR187W.2
XVI:911349-911796
448
RPAB2_YEAST
7-155
149
1
F:55-154
100
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SCOP Domains
(0, 0)
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